Analysis of interatomic Contacts of Structural Units in PDB entry:
3LMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LMK entry

There are 2 chains in PDB entry 3LMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 25ASP 495
B
 ARG 26ASP 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 3LMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 82Right-handed alpha
Helix 2
2
A
101 113Right-handed alpha
Helix 3
3
A
151 163Right-handed alpha
Helix 4
4
A
164 166Right-handed 310
Helix 5
5
A
176 181Right-handed 310
Helix 6
6
A
194 209Right-handed alpha
Helix 7
7
A
221 236Right-handed alpha
Helix 8
8
A
253 268Right-handed alpha
Helix 9
9
A
279 294Right-handed alpha
Helix 10
10
A
310 315Right-handed alpha
Helix 11
11
A
317 322Right-handed alpha
Helix 12
12
A
334 343Right-handed alpha
Helix 13
13
A
354 364Right-handed alpha
Helix 14
14
A
396 419Right-handed alpha
Helix 15
15
A
426 430Right-handed 310
Helix 16
16
A
433 442Right-handed alpha
Helix 17
17
B
65 82Right-handed alpha
Helix 18
18
B
101 113Right-handed alpha
Helix 19
19
B
151 163Right-handed alpha
Helix 20
20
B
164 166Right-handed 310
Helix 21
21
B
176 181Right-handed 310
Helix 22
22
B
194 209Right-handed alpha
Helix 23
23
B
221 238Right-handed alpha
Helix 24
24
B
253 266Right-handed alpha
Helix 25
25
B
279 293Right-handed alpha
Helix 26
26
B
310 315Right-handed alpha
Helix 27
27
B
317 322Right-handed alpha
Helix 28
28
B
334 342Right-handed alpha
Helix 29
29
B
354 364Right-handed alpha
Helix 30
30
B
396 419Right-handed alpha
Helix 31
31
B
426 430Right-handed 310
Helix 32
32
B
433 443Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3LMK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
91 97anti-parallel
Strand 3
A
35 41parallel
Strand 4
A
143 147parallel
Strand 5
A
169 171parallel
Strand 6
A
188 190parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 248first strand
Strand 2
A
213 219parallel
Strand 3
A
273 277parallel
Strand 4
A
300 303parallel
Strand 5
A
325 329parallel
Strand 6
A
466 473anti-parallel
Strand 7
A
479 488anti-parallel
Strand 8
A
491 494anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 447first strand
Strand 2
A
453 455anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
91 97anti-parallel
Strand 3
B
35 41parallel
Strand 4
B
143 147parallel
Strand 5
B
169 171parallel
Strand 6
B
188 190parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 248first strand
Strand 2
B
213 219parallel
Strand 3
B
273 277parallel
Strand 4
B
300 303parallel
Strand 5
B
325 329parallel
Strand 6
B
466 473anti-parallel
Strand 7
B
479 488anti-parallel
Strand 8
B
491 494anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
445 447first strand
Strand 2
B
453 455anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il