Analysis of interatomic Contacts of Structural Units in PDB entry:
3LU0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3LU0 entry

There are 5 chains in PDB entry 3LU0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 235
B	MET 1	ARG 235
C	LYS 8	GLU 1342
D	THR 14	ALA 1389
E	ALA 2	ARG 90

There are104 helices in PDB entry 3LU0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	35	47	Right-handed alpha
Helix 2	2	A	77	87	Right-handed alpha
Helix 3	3	A	212	228	Right-handed alpha
Helix 4	4	B	77	85	Right-handed alpha
Helix 5	5	B	111	115	Right-handed 310
Helix 6	6	B	212	229	Right-handed alpha
Helix 7	7	C	26	30	Right-handed 310
Helix 8	8	C	31	39	Right-handed alpha
Helix 9	9	C	49	54	Right-handed alpha
Helix 10	10	C	207	212	Right-handed alpha
Helix 11	11	C	216	222	Right-handed alpha
Helix 12	12	C	242	247	Right-handed 310
Helix 13	13	C	271	280	Right-handed alpha
Helix 14	14	C	289	294	Right-handed alpha
Helix 15	15	C	320	329	Right-handed alpha
Helix 16	16	C	346	350	Right-handed 310
Helix 17	17	C	359	371	Right-handed alpha
Helix 18	18	C	379	390	Right-handed alpha
Helix 19	19	C	400	407	Right-handed alpha
Helix 20	20	C	423	438	Right-handed alpha
Helix 21	21	C	455	476	Right-handed alpha
Helix 22	22	C	477	482	Right-handed alpha
Helix 23	23	C	498	503	Right-handed alpha
Helix 24	24	C	519	528	Right-handed alpha
Helix 25	25	C	610	614	Right-handed 310
Helix 26	26	C	662	667	Right-handed alpha
Helix 27	27	C	675	685	Right-handed alpha
Helix 28	28	C	704	712	Right-handed alpha
Helix 29	29	C	820	825	Right-handed alpha
Helix 30	30	C	858	864	Right-handed alpha
Helix 31	31	C	896	902	Right-handed alpha
Helix 32	32	C	903	905	Right-handed 310
Helix 33	33	C	936	940	Right-handed 310
Helix 34	34	C	943	981	Right-handed alpha
Helix 35	35	C	985	990	Right-handed alpha
Helix 36	36	C	993	997	Right-handed 310
Helix 37	37	C	1005	1036	Right-handed alpha
Helix 38	38	C	1099	1103	Right-handed 310
Helix 39	39	C	1109	1120	Right-handed alpha
Helix 40	40	C	1121	1123	Right-handed 310
Helix 41	41	C	1126	1131	Right-handed alpha
Helix 42	42	C	1133	1138	Right-handed alpha
Helix 43	43	C	1141	1149	Right-handed alpha
Helix 44	44	C	1165	1172	Right-handed alpha
Helix 45	45	C	1191	1199	Right-handed alpha
Helix 46	46	C	1238	1242	Right-handed 310
Helix 47	47	C	1271	1281	Right-handed alpha
Helix 48	48	C	1284	1291	Right-handed alpha
Helix 49	49	C	1297	1309	Right-handed alpha
Helix 50	50	C	1320	1332	Right-handed alpha
Helix 51	51	D	26	34	Right-handed alpha
Helix 52	52	D	96	101	Right-handed alpha
Helix 53	53	D	114	119	Right-handed alpha
Helix 54	54	D	135	140	Right-handed alpha
Helix 55	55	D	182	191	Right-handed alpha
Helix 56	56	D	193	200	Right-handed alpha
Helix 57	57	D	200	208	Right-handed alpha
Helix 58	58	D	223	229	Right-handed alpha
Helix 59	59	D	233	237	Right-handed 310
Helix 60	60	D	268	275	Right-handed alpha
Helix 61	61	D	279	283	Right-handed 310
Helix 62	62	D	291	308	Right-handed alpha
Helix 63	63	D	328	333	Right-handed alpha
Helix 64	64	D	337	342	Right-handed alpha
Helix 65	65	D	370	377	Right-handed alpha
Helix 66	66	D	378	386	Right-handed alpha
Helix 67	67	D	407	414	Right-handed alpha
Helix 68	68	D	430	432	Right-handed 310
Helix 69	69	D	451	456	Right-handed 310
Helix 70	70	D	474	479	Right-handed alpha
Helix 71	71	D	504	514	Right-handed alpha
Helix 72	72	D	531	540	Right-handed alpha
Helix 73	73	D	558	566	Right-handed alpha
Helix 74	74	D	574	583	Right-handed alpha
Helix 75	75	D	584	586	Right-handed 310
Helix 76	76	D	603	612	Right-handed alpha
Helix 77	77	D	614	636	Right-handed alpha
Helix 78	78	D	649	659	Right-handed alpha
Helix 79	79	D	659	671	Right-handed alpha
Helix 80	80	D	681	688	Right-handed alpha
Helix 81	81	D	688	699	Right-handed alpha
Helix 82	82	D	700	717	Right-handed alpha
Helix 83	83	D	720	728	Right-handed alpha
Helix 84	84	D	735	741	Right-handed alpha
Helix 85	85	D	768	786	Right-handed alpha
Helix 86	86	D	797	802	Right-handed alpha
Helix 87	87	D	863	873	Right-handed alpha
Helix 88	88	D	916	925	Right-handed alpha
Helix 89	89	D	926	929	Right-handed 310
Helix 90	90	D	1137	1146	Right-handed alpha
Helix 91	91	D	1216	1224	Right-handed alpha
Helix 92	92	D	1225	1233	Right-handed alpha
Helix 93	93	D	1237	1245	Right-handed alpha
Helix 94	94	D	1250	1255	Right-handed alpha
Helix 95	95	D	1257	1261	Right-handed 310
Helix 96	96	D	1280	1292	Right-handed alpha
Helix 97	97	D	1321	1325	Right-handed 310
Helix 98	98	D	1327	1338	Right-handed alpha
Helix 99	99	D	1347	1352	Right-handed alpha
Helix 100	100	D	1372	1387	Right-handed alpha
Helix 101	101	E	5	13	Right-handed alpha
Helix 102	102	E	15	33	Right-handed alpha
Helix 103	103	E	50	56	Right-handed alpha
Helix 104	104	E	74	85	Right-handed alpha

There are 42 sheets in PDB entry 3LU0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	23	28	anti-parallel
Strand 3	A	198	207	anti-parallel
Strand 4	A	180	190	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	102	first strand
Strand 2	A	142	149	anti-parallel
Strand 3	A	53	61	anti-parallel
Strand 4	A	171	172	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	121	122	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	129	131	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	175	176	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	16	first strand
Strand 2	B	23	31	anti-parallel
Strand 3	B	198	206	anti-parallel
Strand 4	B	185	190	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	58	first strand
Strand 2	B	143	150	anti-parallel
Strand 3	B	98	101	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	121	122	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	66	67	anti-parallel
Strand 3	C	103	104	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	73	first strand
Strand 2	C	98	100	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	142	144	anti-parallel
Strand 3	C	513	514	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	147	150	anti-parallel
Strand 3	C	530	531	parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	176	first strand
Strand 2	C	184	189	anti-parallel
Strand 3	C	193	198	anti-parallel
Strand 4	C	204	205	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	230	first strand
Strand 2	C	333	336	anti-parallel
Strand 3	C	296	297	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	233	first strand
Strand 2	C	236	239	anti-parallel
Strand 3	C	285	286	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	250	first strand
Strand 2	C	268	269	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	309	311	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	598	606	first strand
Strand 2	C	589	595	anti-parallel
Strand 3	C	652	654	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	634	637	first strand
Strand 2	C	642	645	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	784	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	723	724	first strand
Strand 2	C	734	736	anti-parallel
Strand 3	C	747	749	anti-parallel

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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	798	799	first strand
Strand 2	C	1231	1234	anti-parallel
Strand 3	C	1065	1067	anti-parallel
Strand 4	C	1074	1076	anti-parallel
Strand 5	C	815	818	parallel
Strand 6	C	1096	1097	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	802	803	first strand
Strand 2	C	1227	1228	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	839	first strand
Strand 2	C	1049	1058	anti-parallel
Strand 3	C	927	930	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	842	843	first strand
Strand 2	C	846	847	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	918	919	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1087	1088	first strand
Strand 2	C	1091	1093	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1337	1338	first strand
Strand 2	D	20	22	anti-parallel
Strand 3	D	1341	1342	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	111	first strand
Strand 2	D	239	243	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	147	first strand
Strand 2	D	178	179	anti-parallel

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There are 7 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	357	first strand
Strand 2	D	447	449	parallel
Strand 3	D	365	369	anti-parallel
Strand 4	D	434	442	parallel
Strand 5	D	421	424	anti-parallel
Strand 6	D	465	469	anti-parallel
Strand 7	D	352	357	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	821	824	first strand
Strand 2	D	879	882	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	995	997	first strand
Strand 2	D	980	985	anti-parallel
Strand 3	D	956	959	anti-parallel
Strand 4	D	1010	1011	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	966	967	first strand
Strand 2	D	973	974	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1002	1003	first strand
Strand 2	D	1018	1019	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1027	1028	first strand
Strand 2	D	1120	1122	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1098	1100	first strand
Strand 2	D	1077	1081	anti-parallel
Strand 3	D	1033	1038	anti-parallel
Strand 4	D	1114	1115	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1046	1050	first strand
Strand 2	D	1057	1061	anti-parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1164	1165	first strand
Strand 2	D	1173	1176	anti-parallel
Strand 3	D	1187	1190	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1265	1266	first strand
Strand 2	D	1302	1303	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1369	1371	first strand
Strand 2	E	60	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3LU0

Analysis of interatomic Contacts of Structural Units in PDB entry:
3LU0