Analysis of interatomic Contacts of Structural Units in PDB entry:
3LVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LVQ entry

There is 1 chain in PDB entry 3LVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ASP 423LYS 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3LVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
E
423 434Right-handed alpha
Helix 2
2
E
461 472Right-handed alpha
Helix 3
3
E
487 492Right-handed 310
Helix 4
4
E
498 507Right-handed alpha
Helix 5
5
E
523 536Right-handed alpha
Helix 6
6
E
547 558Right-handed alpha
Helix 7
7
E
559 569Right-handed alpha
Helix 8
8
E
588 596Right-handed alpha
Helix 9
9
E
601 612Right-handed alpha
Helix 10
10
E
624 630Right-handed alpha
Helix 11
11
E
634 644Right-handed alpha
Helix 12
12
E
657 665Right-handed alpha
Helix 13
13
E
667 677Right-handed alpha
Helix 14
14
E
25 36Right-handed alpha
Helix 15
15
E
67 79Right-handed 310
Helix 16
16
E
92 94Right-handed 310
Helix 17
17
E
95 108Right-handed alpha
Helix 18
18
E
109 113Right-handed 310
Helix 19
19
E
131 139Right-handed alpha
Helix 20
20
E
161 173Right-handed alpha
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There are 2 sheets in PDB entry 3LVQ. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
459 460first strand
Strand 2
E
451 453anti-parallel
Strand 3
E
478 480anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
47 53first strand
Strand 2
E
58 64anti-parallel
Strand 3
E
13 19parallel
Strand 4
E
83 89parallel
Strand 5
E
116 122parallel
Strand 6
E
149 153parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il