Analysis of interatomic Contacts of Structural Units in PDB entry:
3LW0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LW0 entry

There are 4 chains in PDB entry 3LW0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 983LYS 1286
B
ALA 983LYS 1286
C
ALA 983LYS 1286
D
ALA 983LYS 1286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 3LW0. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
995 997Right-handed 310
Helix 2
2
A
1040 1055Right-handed alpha
Helix 3
3
A
1086 1094Right-handed alpha
Helix 4
4
A
1108 1129Right-handed alpha
Helix 5
5
A
1137 1139Right-handed 310
Helix 6
6
A
1161 1165Right-handed 310
Helix 7
7
A
1175 1179Right-handed 310
Helix 8
8
A
1180 1187Right-handed alpha
Helix 9
9
A
1190 1208Right-handed alpha
Helix 10
10
A
1217 1227Right-handed alpha
Helix 11
11
A
1238 1249Right-handed alpha
Helix 12
12
A
1252 1256Right-handed 310
Helix 13
13
A
1258 1267Right-handed alpha
Helix 14
14
A
1268 1270Right-handed 310
Helix 15
15
A
1273 1278Right-handed alpha
Helix 16
16
B
995 997Right-handed 310
Helix 17
17
B
1040 1055Right-handed alpha
Helix 18
18
B
1086 1094Right-handed alpha
Helix 19
19
B
1108 1129Right-handed alpha
Helix 20
20
B
1137 1139Right-handed 310
Helix 21
21
B
1161 1165Right-handed 310
Helix 22
22
B
1175 1179Right-handed 310
Helix 23
23
B
1180 1187Right-handed alpha
Helix 24
24
B
1190 1208Right-handed alpha
Helix 25
25
B
1217 1227Right-handed alpha
Helix 26
26
B
1238 1249Right-handed alpha
Helix 27
27
B
1252 1256Right-handed 310
Helix 28
28
B
1258 1267Right-handed alpha
Helix 29
29
B
1268 1270Right-handed 310
Helix 30
30
B
1273 1278Right-handed alpha
Helix 31
31
C
995 997Right-handed 310
Helix 32
32
C
1040 1055Right-handed alpha
Helix 33
33
C
1087 1094Right-handed alpha
Helix 34
34
C
1108 1129Right-handed alpha
Helix 35
35
C
1137 1139Right-handed 310
Helix 36
36
C
1161 1165Right-handed 310
Helix 37
37
C
1175 1179Right-handed 310
Helix 38
38
C
1180 1187Right-handed alpha
Helix 39
39
C
1190 1208Right-handed alpha
Helix 40
40
C
1217 1227Right-handed alpha
Helix 41
41
C
1238 1249Right-handed alpha
Helix 42
42
C
1252 1256Right-handed 310
Helix 43
43
C
1258 1267Right-handed alpha
Helix 44
44
C
1268 1270Right-handed 310
Helix 45
45
C
1273 1278Right-handed alpha
Helix 46
46
D
995 997Right-handed 310
Helix 47
47
D
1040 1055Right-handed alpha
Helix 48
48
D
1086 1094Right-handed alpha
Helix 49
49
D
1108 1129Right-handed alpha
Helix 50
50
D
1137 1139Right-handed 310
Helix 51
51
D
1161 1165Right-handed 310
Helix 52
52
D
1175 1179Right-handed 310
Helix 53
53
D
1180 1187Right-handed alpha
Helix 54
54
D
1190 1208Right-handed alpha
Helix 55
55
D
1217 1227Right-handed alpha
Helix 56
56
D
1238 1249Right-handed alpha
Helix 57
57
D
1252 1256Right-handed 310
Helix 58
58
D
1258 1267Right-handed alpha
Helix 59
59
D
1268 1270Right-handed 310
Helix 60
60
D
1273 1278Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3LW0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
999 1007first strand
Strand 2
A
1012 1022anti-parallel
Strand 3
A
1025 1034anti-parallel
Strand 4
A
1076 1080anti-parallel
Strand 5
A
1065 1069anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1141 1143first strand
Strand 2
A
1149 1151anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
999 1007first strand
Strand 2
B
1012 1022anti-parallel
Strand 3
B
1025 1034anti-parallel
Strand 4
B
1076 1080anti-parallel
Strand 5
B
1065 1069anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1141 1143first strand
Strand 2
B
1149 1151anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
999 1007first strand
Strand 2
C
1012 1022anti-parallel
Strand 3
C
1025 1034anti-parallel
Strand 4
C
1076 1080anti-parallel
Strand 5
C
1065 1069anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1085 1086first strand
Strand 2
C
1141 1143anti-parallel
Strand 3
C
1149 1151anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
999 1007first strand
Strand 2
D
1012 1022anti-parallel
Strand 3
D
1025 1034anti-parallel
Strand 4
D
1076 1080anti-parallel
Strand 5
D
1065 1069anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1141 1143first strand
Strand 2
D
1149 1151anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il