Analysis of interatomic Contacts of Structural Units in PDB entry:
3LYA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LYA entry

There is 1 chain in PDB entry 3LYA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 192LEU 509
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3LYA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
213 235Right-handed alpha
Helix 2
2
A
298 314Right-handed alpha
Helix 3
3
A
319 330Right-handed alpha
Helix 4
4
A
333 350Right-handed alpha
Helix 5
5
A
351 369Right-handed alpha
Helix 6
6
A
372 388Right-handed alpha
Helix 7
7
A
393 409Right-handed alpha
Helix 8
8
A
410 414Right-handed 310
Helix 9
9
A
416 430Right-handed alpha
Helix 10
10
A
432 447Right-handed alpha
Helix 11
11
A
449 463Right-handed alpha
Helix 12
12
A
465 480Right-handed alpha
Helix 13
13
A
482 492Right-handed alpha
Helix 14
14
A
497 502Right-handed alpha
Helix 15
15
A
502 509Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3LYA.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
195 204parallel
Strand 3
A
253 263parallel
Strand 4
A
272 280anti-parallel
Strand 5
A
285 292anti-parallel
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