Analysis of interatomic Contacts of Structural Units in PDB entry:
3M0C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3M0C entry

There are 3 chains in PDB entry 3M0C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 61	GLN 152
B	SER 153	ARG 682
C	CYS 255	THR 692

There are 16 helices in PDB entry 3M0C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	69	71	Right-handed 310
Helix 2	2	A	87	105	Right-handed alpha
Helix 3	3	A	127	129	Right-handed 310
Helix 4	4	A	130	136	Right-handed alpha
Helix 5	5	B	155	161	Right-handed alpha
Helix 6	6	B	224	236	Right-handed alpha
Helix 7	7	B	261	278	Right-handed alpha
Helix 8	8	B	294	307	Right-handed alpha
Helix 9	9	B	321	323	Right-handed 310
Helix 10	10	B	384	403	Right-handed alpha
Helix 11	11	B	407	418	Right-handed alpha
Helix 12	12	B	425	429	Right-handed 310
Helix 13	13	B	430	434	Right-handed 310
Helix 14	14	C	299	304	Right-handed 310
Helix 15	15	C	635	639	Right-handed 310
Helix 16	16	C	651	656	Right-handed 310

There are 22 sheets in PDB entry 3M0C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	65	first strand
Strand 2	A	140	151	parallel
Strand 3	B	258	260	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	115	first strand
Strand 2	A	121	125	anti-parallel
Strand 3	A	73	82	anti-parallel
Strand 4	A	140	151	anti-parallel
Strand 5	B	289	292	anti-parallel
Strand 6	B	325	326	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	206	first strand
Strand 2	B	246	251	parallel
Strand 3	B	181	186	parallel
Strand 4	B	283	287	parallel
Strand 5	B	310	314	parallel
Strand 6	B	334	339	parallel
Strand 7	B	361	364	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	351	352	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	371	first strand
Strand 2	B	378	382	anti-parallel
Strand 3	C	307	310	anti-parallel
Strand 4	C	315	318	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	421	first strand
Strand 2	B	440	441	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	461	first strand
Strand 2	B	521	528	anti-parallel
Strand 3	B	482	489	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	475	first strand
Strand 2	B	506	513	anti-parallel
Strand 3	B	495	503	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	539	first strand
Strand 2	B	595	602	anti-parallel
Strand 3	B	558	565	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	551	first strand
Strand 2	B	587	590	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	615	first strand
Strand 2	B	672	681	anti-parallel
Strand 3	B	631	637	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	621	625	first strand
Strand 2	B	653	658	anti-parallel
Strand 3	B	644	650	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	326	first strand
Strand 2	C	330	332	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	363	first strand
Strand 2	C	372	373	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	402	first strand
Strand 2	C	388	391	anti-parallel
Strand 3	C	379	383	anti-parallel
Strand 4	C	631	634	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	408	414	first strand
Strand 2	C	419	424	anti-parallel
Strand 3	C	429	434	anti-parallel
Strand 4	C	445	448	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	461	first strand
Strand 2	C	466	471	anti-parallel
Strand 3	C	476	481	anti-parallel
Strand 4	C	487	492	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	504	first strand
Strand 2	C	509	514	anti-parallel
Strand 3	C	520	525	anti-parallel
Strand 4	C	531	535	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	542	548	first strand
Strand 2	C	553	558	anti-parallel
Strand 3	C	563	568	anti-parallel
Strand 4	C	575	579	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	587	593	first strand
Strand 2	C	596	601	anti-parallel
Strand 3	C	606	611	anti-parallel
Strand 4	C	619	622	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	659	662	first strand
Strand 2	C	673	676	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	682	683	first strand
Strand 2	C	690	691	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3M0C

Analysis of interatomic Contacts of Structural Units in PDB entry:
3M0C