Analysis of interatomic Contacts of Structural Units in PDB entry:
3M10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M10 entry

There are 2 chains in PDB entry 3M10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2ALA 357
B
 VAL 2ALA 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3M10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 20Right-handed alpha
Helix 2
2
A
25 31Right-handed alpha
Helix 3
3
A
32 40Right-handed alpha
Helix 4
4
A
50 60Right-handed alpha
Helix 5
5
A
73 78Right-handed alpha
Helix 6
6
A
78 90Right-handed alpha
Helix 7
7
A
106 110Right-handed 310
Helix 8
8
A
136 140Right-handed 310
Helix 9
9
A
141 158Right-handed alpha
Helix 10
10
A
160 163Right-handed 310
Helix 11
11
A
174 185Right-handed alpha
Helix 12
12
A
192 197Right-handed alpha
Helix 13
13
A
238 257Right-handed alpha
Helix 14
14
A
289 292Right-handed 310
Helix 15
15
A
293 304Right-handed alpha
Helix 16
16
A
334 356Right-handed alpha
Helix 17
17
B
3 20Right-handed alpha
Helix 18
18
B
25 31Right-handed alpha
Helix 19
19
B
32 40Right-handed alpha
Helix 20
20
B
50 60Right-handed alpha
Helix 21
21
B
73 78Right-handed alpha
Helix 22
22
B
78 90Right-handed alpha
Helix 23
23
B
106 110Right-handed 310
Helix 24
24
B
136 140Right-handed 310
Helix 25
25
B
141 158Right-handed alpha
Helix 26
26
B
160 163Right-handed 310
Helix 27
27
B
174 184Right-handed alpha
Helix 28
28
B
192 197Right-handed alpha
Helix 29
29
B
238 257Right-handed alpha
Helix 30
30
B
289 292Right-handed 310
Helix 31
31
B
293 304Right-handed alpha
Helix 32
32
B
334 356Right-handed alpha
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There are 4 sheets in PDB entry 3M10. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 169first strand
Strand 2
A
209 213anti-parallel
Strand 3
A
218 222anti-parallel
Strand 4
A
228 235anti-parallel
Strand 5
A
120 129anti-parallel
Strand 6
A
280 286anti-parallel
Strand 7
A
322 327anti-parallel
Strand 8
A
306 309anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
266 267anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 169first strand
Strand 2
B
209 213anti-parallel
Strand 3
B
218 222anti-parallel
Strand 4
B
228 235anti-parallel
Strand 5
B
120 129anti-parallel
Strand 6
B
280 286anti-parallel
Strand 7
B
322 327anti-parallel
Strand 8
B
306 309anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 262first strand
Strand 2
B
266 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il