Analysis of interatomic Contacts of Structural Units in PDB entry:
3M4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M4D entry

There are 7 chains in PDB entry 3M4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 1ASN 293
B
ALA 1ASN 293
C
ALA 1ASN 293
D
ALA 1ASN 293
E
ALA 1ASN 293
F
ALA 1ASN 293
G
ALA 1ASN 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3M4D. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1 6Right-handed 310
Helix 2
2
A
205 209Right-handed 310
Helix 3
3
A
212 216Right-handed 310
Helix 4
4
A
217 222Right-handed alpha
Helix 5
5
B
1 6Right-handed 310
Helix 6
6
B
205 209Right-handed 310
Helix 7
7
B
212 216Right-handed 310
Helix 8
8
B
217 222Right-handed alpha
Helix 9
9
C
1 6Right-handed 310
Helix 10
10
C
205 209Right-handed 310
Helix 11
11
C
212 216Right-handed 310
Helix 12
12
C
217 222Right-handed alpha
Helix 13
13
D
1 6Right-handed 310
Helix 14
14
D
205 209Right-handed 310
Helix 15
15
D
212 216Right-handed 310
Helix 16
16
D
217 222Right-handed alpha
Helix 17
17
E
1 6Right-handed 310
Helix 18
18
E
205 209Right-handed 310
Helix 19
19
E
212 216Right-handed 310
Helix 20
20
E
217 222Right-handed alpha
Helix 21
21
F
1 6Right-handed 310
Helix 22
22
F
205 209Right-handed 310
Helix 23
23
F
212 216Right-handed 310
Helix 24
24
F
217 222Right-handed alpha
Helix 25
25
G
1 6Right-handed 310
Helix 26
26
G
205 209Right-handed 310
Helix 27
27
G
212 216Right-handed 310
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There are 31 sheets in PDB entry 3M4D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
21 29first strand
Strand 2
A
34 43anti-parallel
Strand 3
A
51 61anti-parallel
Strand 4
A
228 234anti-parallel
Strand 5
A
97 102anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
66 69first strand
Strand 2
A
75 89anti-parallel
Strand 3
A
164 171anti-parallel
Strand 4
A
153 157anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
66 69first strand
Strand 2
A
75 89anti-parallel
Strand 3
A
242 260anti-parallel
Strand 4
A
265 285anti-parallel
Strand 5
A
290 292anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
132 151first strand
Strand 2
G
109 127anti-parallel
Strand 3
A
133 151anti-parallel
Strand 4
A
109 127anti-parallel
Strand 5
B
133 151anti-parallel
Strand 6
B
109 121anti-parallel
Strand 7
C
132 151anti-parallel
Strand 8
B
124 125anti-parallel
Strand 9
B
133 151anti-parallel
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There are 11 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
132 151first strand
Strand 2
C
109 127anti-parallel
Strand 3
D
132 151anti-parallel
Strand 4
D
109 127anti-parallel
Strand 5
E
132 151anti-parallel
Strand 6
E
109 126anti-parallel
Strand 7
F
132 151anti-parallel
Strand 8
F
109 121anti-parallel
Strand 9
G
132 151anti-parallel
Strand 10
F
124 127anti-parallel
Strand 11
F
132 151anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
174 176first strand
Strand 2
A
179 182anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
21 29first strand
Strand 2
B
34 43anti-parallel
Strand 3
B
51 61anti-parallel
Strand 4
B
228 234anti-parallel
Strand 5
B
97 102anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
66 70first strand
Strand 2
B
75 89anti-parallel
Strand 3
B
164 171anti-parallel
Strand 4
B
153 158anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
66 70first strand
Strand 2
B
75 89anti-parallel
Strand 3
B
242 260anti-parallel
Strand 4
B
265 285anti-parallel
Strand 5
B
290 292anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
174 176first strand
Strand 2
B
179 182anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
21 29first strand
Strand 2
C
34 43anti-parallel
Strand 3
C
51 61anti-parallel
Strand 4
C
228 234anti-parallel
Strand 5
C
97 102anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
66 69first strand
Strand 2
C
75 89anti-parallel
Strand 3
C
164 171anti-parallel
Strand 4
C
153 157anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
66 69first strand
Strand 2
C
75 89anti-parallel
Strand 3
C
242 260anti-parallel
Strand 4
C
265 285anti-parallel
Strand 5
C
290 292anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
174 176first strand
Strand 2
C
179 182anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
21 29first strand
Strand 2
D
34 43anti-parallel
Strand 3
D
51 61anti-parallel
Strand 4
D
228 234anti-parallel
Strand 5
D
97 102anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
66 70first strand
Strand 2
D
75 89anti-parallel
Strand 3
D
164 171anti-parallel
Strand 4
D
153 158anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
66 70first strand
Strand 2
D
75 89anti-parallel
Strand 3
D
242 260anti-parallel
Strand 4
D
265 285anti-parallel
Strand 5
D
290 292anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
174 176first strand
Strand 2
D
179 182anti-parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
21 29first strand
Strand 2
E
34 43anti-parallel
Strand 3
E
51 61anti-parallel
Strand 4
E
228 234anti-parallel
Strand 5
E
97 102anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
66 71first strand
Strand 2
E
75 89anti-parallel
Strand 3
E
164 171anti-parallel
Strand 4
E
153 157anti-parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
66 71first strand
Strand 2
E
75 89anti-parallel
Strand 3
E
242 260anti-parallel
Strand 4
E
265 285anti-parallel
Strand 5
E
290 292anti-parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
174 176first strand
Strand 2
E
179 182anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
21 29first strand
Strand 2
F
34 43anti-parallel
Strand 3
F
60 61anti-parallel
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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
21 29first strand
Strand 2
F
34 43anti-parallel
Strand 3
F
51 57anti-parallel
Strand 4
F
228 234anti-parallel
Strand 5
F
97 102anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
66 71first strand
Strand 2
F
75 89anti-parallel
Strand 3
F
164 171anti-parallel
Strand 4
F
153 157anti-parallel
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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
66 71first strand
Strand 2
F
75 89anti-parallel
Strand 3
F
242 260anti-parallel
Strand 4
F
265 285anti-parallel
Strand 5
F
290 292anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
174 176first strand
Strand 2
F
179 182anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
21 29first strand
Strand 2
G
34 43anti-parallel
Strand 3
G
51 61anti-parallel
Strand 4
G
228 234anti-parallel
Strand 5
G
97 102anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
66 70first strand
Strand 2
G
75 89anti-parallel
Strand 3
G
164 171anti-parallel
Strand 4
G
153 158anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
66 70first strand
Strand 2
G
75 89anti-parallel
Strand 3
G
242 260anti-parallel
Strand 4
G
265 285anti-parallel
Strand 5
G
290 292anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
174 176first strand
Strand 2
G
179 182anti-parallel
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