Analysis of interatomic Contacts of Structural Units in PDB entry:
3M62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M62 entry

There are 2 chains in PDB entry 3M62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -5ALA 955
B
 SER 3GLN 74
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 3M62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-4 9Right-handed alpha
Helix 2
2
A
35 37Right-handed 310
Helix 3
3
A
38 49Right-handed alpha
Helix 4
4
A
55 76Right-handed alpha
Helix 5
5
A
79 82Right-handed 310
Helix 6
6
A
83 102Right-handed alpha
Helix 7
7
A
112 123Right-handed alpha
Helix 8
8
A
124 126Right-handed 310
Helix 9
9
A
127 142Right-handed alpha
Helix 10
10
A
143 162Right-handed alpha
Helix 11
11
A
170 186Right-handed alpha
Helix 12
12
A
187 194Right-handed alpha
Helix 13
13
A
195 197Right-handed 310
Helix 14
14
A
207 209Right-handed 310
Helix 15
15
A
210 215Right-handed alpha
Helix 16
16
A
217 222Right-handed alpha
Helix 17
17
A
227 235Right-handed alpha
Helix 18
18
A
242 275Right-handed alpha
Helix 19
19
A
275 292Right-handed alpha
Helix 20
20
A
293 298Right-handed 310
Helix 21
21
A
302 306Right-handed 310
Helix 22
22
A
308 324Right-handed alpha
Helix 23
23
A
325 328Right-handed 310
Helix 24
24
A
333 337Right-handed 310
Helix 25
25
A
360 372Right-handed alpha
Helix 26
26
A
380 396Right-handed alpha
Helix 27
27
A
396 406Right-handed alpha
Helix 28
28
A
406 422Right-handed alpha
Helix 29
29
A
428 461Right-handed alpha
Helix 30
30
A
462 485Right-handed alpha
Helix 31
31
A
511 518Right-handed alpha
Helix 32
32
A
522 527Right-handed 310
Helix 33
33
A
528 542Right-handed alpha
Helix 34
34
A
554 568Right-handed alpha
Helix 35
35
A
574 590Right-handed alpha
Helix 36
36
A
600 607Right-handed alpha
Helix 37
37
A
607 625Right-handed alpha
Helix 38
38
A
626 628Right-handed 310
Helix 39
39
A
636 655Right-handed alpha
Helix 40
40
A
655 669Right-handed alpha
Helix 41
41
A
669 707Right-handed alpha
Helix 42
42
A
719 755Right-handed alpha
Helix 43
43
A
756 760Right-handed 310
Helix 44
44
A
761 781Right-handed alpha
Helix 45
45
A
781 786Right-handed alpha
Helix 46
46
A
791 796Right-handed 310
Helix 47
47
A
798 813Right-handed alpha
Helix 48
48
A
816 826Right-handed alpha
Helix 49
49
A
831 843Right-handed alpha
Helix 50
50
A
850 879Right-handed alpha
Helix 51
51
A
882 886Right-handed 310
Helix 52
52
A
909 917Right-handed alpha
Helix 53
53
A
930 934Right-handed 310
Helix 54
54
A
937 953Right-handed alpha
Helix 55
55
B
23 34Right-handed alpha
Helix 56
56
B
38 42Right-handed 310
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There are 3 sheets in PDB entry 3M62. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
21 22parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
906 908first strand
Strand 2
A
897 899anti-parallel
Strand 3
A
935 936anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 16first strand
Strand 2
B
4 7anti-parallel
Strand 3
B
67 71parallel
Strand 4
B
43 46anti-parallel
Strand 5
B
49 50anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il