Analysis of interatomic Contacts of Structural Units in PDB entry:
3MB5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MB5 entry

There is 1 chain in PDB entry 3MB5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 3MB5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 40Right-handed 310
Helix 2
2
A
62 70Right-handed alpha
Helix 3
3
A
78 89Right-handed alpha
Helix 4
4
A
105 116Right-handed alpha
Helix 5
5
A
127 142Right-handed alpha
Helix 6
6
A
153 157Right-handed 310
Helix 7
7
A
172 175Right-handed 310
Helix 8
8
A
176 183Right-handed alpha
Helix 9
9
A
196 210Right-handed alpha
Helix 10
10
A
211 214Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 3MB5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
7 11anti-parallel
Strand 3
A
55 59anti-parallel
Strand 4
A
47 49anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
32 35anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
120 124parallel
Strand 3
A
96 100parallel
Strand 4
A
163 168parallel
Strand 5
A
184 194parallel
Strand 6
A
246 251anti-parallel
Strand 7
A
218 220anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
233 236anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il