Analysis of interatomic Contacts of Structural Units in PDB entry:
3MDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MDJ entry

There are 2 chains in PDB entry 3MDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 46GLN 934
B
 PRO 46ILE 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are102 helices in PDB entry 3MDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
186 191Right-handed alpha
Helix 2
2
A
243 247Right-handed 310
Helix 3
3
A
275 278Right-handed 310
Helix 4
4
A
279 297Right-handed alpha
Helix 5
5
A
330 332Right-handed 310
Helix 6
6
A
340 357Right-handed alpha
Helix 7
7
A
368 370Right-handed 310
Helix 8
8
A
371 391Right-handed alpha
Helix 9
9
A
392 395Right-handed 310
Helix 10
10
A
396 412Right-handed alpha
Helix 11
11
A
434 452Right-handed alpha
Helix 12
12
A
453 469Right-handed alpha
Helix 13
13
A
474 483Right-handed alpha
Helix 14
14
A
516 526Right-handed alpha
Helix 15
15
A
602 605Right-handed 310
Helix 16
16
A
615 627Right-handed alpha
Helix 17
17
A
628 631Right-handed 310
Helix 18
18
A
632 649Right-handed alpha
Helix 19
19
A
653 662Right-handed alpha
Helix 20
20
A
663 667Right-handed 310
Helix 21
21
A
669 688Right-handed alpha
Helix 22
22
A
692 714Right-handed alpha
Helix 23
23
A
721 738Right-handed alpha
Helix 24
24
A
740 756Right-handed alpha
Helix 25
25
A
764 776Right-handed alpha
Helix 26
26
A
778 789Right-handed alpha
Helix 27
27
A
795 807Right-handed alpha
Helix 28
28
A
810 821Right-handed alpha
Helix 29
29
A
831 840Right-handed alpha
Helix 30
30
A
845 856Right-handed alpha
Helix 31
31
A
856 862Right-handed alpha
Helix 32
32
A
871 880Right-handed alpha
Helix 33
33
A
884 892Right-handed alpha
Helix 34
34
A
908 933Right-handed alpha
Helix 35
35
B
186 190Right-handed 310
Helix 36
36
B
243 247Right-handed 310
Helix 37
37
B
272 278Right-handed 310
Helix 38
38
B
279 298Right-handed alpha
Helix 39
39
B
330 332Right-handed 310
Helix 40
40
B
340 357Right-handed alpha
Helix 41
41
B
368 370Right-handed 310
Helix 42
42
B
371 391Right-handed alpha
Helix 43
43
B
392 395Right-handed 310
Helix 44
44
B
396 412Right-handed alpha
Helix 45
45
B
434 452Right-handed alpha
Helix 46
46
B
453 469Right-handed alpha
Helix 47
47
B
474 483Right-handed alpha
Helix 48
48
B
516 526Right-handed alpha
Helix 49
49
B
602 605Right-handed 310
Helix 50
50
B
615 628Right-handed alpha
Helix 51
51
B
629 631Right-handed 310
Helix 52
52
B
632 648Right-handed alpha
Helix 53
53
B
653 662Right-handed alpha
Helix 54
54
B
663 667Right-handed 310
Helix 55
55
B
669 688Right-handed alpha
Helix 56
56
B
692 714Right-handed alpha
Helix 57
57
B
721 738Right-handed alpha
Helix 58
58
B
740 756Right-handed alpha
Helix 59
59
B
764 776Right-handed alpha
Helix 60
60
B
778 791Right-handed alpha
Helix 61
61
B
795 806Right-handed alpha
Helix 62
62
B
810 821Right-handed alpha
Helix 63
63
B
831 841Right-handed alpha
Helix 64
64
B
845 856Right-handed alpha
Helix 65
65
B
856 861Right-handed alpha
Helix 66
66
B
871 880Right-handed alpha
Helix 67
67
B
885 892Right-handed alpha
Helix 68
68
B
908 933Right-handed alpha
Helix 69
69
C
186 190Right-handed 310
Helix 70
70
C
243 247Right-handed 310
Helix 71
71
C
275 278Right-handed 310
Helix 72
72
C
279 298Right-handed alpha
Helix 73
73
C
330 332Right-handed 310
Helix 74
74
C
340 357Right-handed alpha
Helix 75
75
C
368 370Right-handed 310
Helix 76
76
C
371 391Right-handed alpha
Helix 77
77
C
392 395Right-handed 310
Helix 78
78
C
396 412Right-handed alpha
Helix 79
79
C
434 452Right-handed alpha
Helix 80
80
C
453 469Right-handed alpha
Helix 81
81
C
474 484Right-handed alpha
Helix 82
82
C
516 526Right-handed alpha
Helix 83
83
C
602 605Right-handed 310
Helix 84
84
C
615 628Right-handed alpha
Helix 85
85
C
629 631Right-handed 310
Helix 86
86
C
632 648Right-handed alpha
Helix 87
87
C
653 662Right-handed alpha
Helix 88
88
C
663 667Right-handed 310
Helix 89
89
C
669 688Right-handed alpha
Helix 90
90
C
692 714Right-handed alpha
Helix 91
91
C
721 738Right-handed alpha
Helix 92
92
C
740 756Right-handed alpha
Helix 93
93
C
764 776Right-handed alpha
Helix 94
94
C
778 789Right-handed alpha
Helix 95
95
C
795 807Right-handed alpha
Helix 96
96
C
810 821Right-handed alpha
Helix 97
97
C
831 840Right-handed alpha
Helix 98
98
C
845 856Right-handed alpha
Helix 99
99
C
856 862Right-handed alpha
Helix 100
100
C
871 880Right-handed alpha
Helix 101
101
C
885 892Right-handed alpha
Helix 102
102
C
908 933Right-handed alpha
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There are 23 sheets in PDB entry 3MDJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 119first strand
Strand 2
A
101 108anti-parallel
Strand 3
A
144 154anti-parallel
Strand 4
A
75 86anti-parallel
Strand 5
A
58 70anti-parallel
Strand 6
A
202 209parallel
Strand 7
A
231 236anti-parallel
Strand 8
A
221 228anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
130 134anti-parallel
Strand 3
A
121 125anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 168first strand
Strand 2
A
174 181anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
249 252anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 260first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
305 311parallel
Strand 4
A
324 328parallel
Strand 5
A
318 319anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
471 473parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 590first strand
Strand 2
A
541 548anti-parallel
Strand 3
A
531 538anti-parallel
Strand 4
A
609 612parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 582first strand
Strand 2
A
565 571anti-parallel
Strand 3
A
598 600anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
101 108anti-parallel
Strand 3
B
145 154anti-parallel
Strand 4
B
75 86anti-parallel
Strand 5
B
58 70anti-parallel
Strand 6
B
202 209parallel
Strand 7
B
231 236anti-parallel
Strand 8
B
221 228anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 96first strand
Strand 2
B
130 134anti-parallel
Strand 3
B
121 125anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 168first strand
Strand 2
B
174 181anti-parallel
Strand 3
B
249 252anti-parallel
Strand 4
B
214 217anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 260first strand
Strand 2
B
266 271anti-parallel
Strand 3
B
305 311parallel
Strand 4
B
324 328parallel
Strand 5
B
318 319anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 366first strand
Strand 2
B
471 473parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
586 590first strand
Strand 2
B
541 548anti-parallel
Strand 3
B
531 538anti-parallel
Strand 4
B
609 612parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
578 582first strand
Strand 2
B
565 571anti-parallel
Strand 3
B
598 600anti-parallel
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There are 8 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 119first strand
Strand 2
C
101 108anti-parallel
Strand 3
C
145 154anti-parallel
Strand 4
C
75 86anti-parallel
Strand 5
C
58 70anti-parallel
Strand 6
C
202 209parallel
Strand 7
C
231 236anti-parallel
Strand 8
C
221 228anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 96first strand
Strand 2
C
130 134anti-parallel
Strand 3
C
121 125anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 168first strand
Strand 2
C
174 181anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 217first strand
Strand 2
C
249 252anti-parallel
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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
255 260first strand
Strand 2
C
266 271anti-parallel
Strand 3
C
305 311parallel
Strand 4
C
324 328parallel
Strand 5
C
318 319anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
364 366first strand
Strand 2
C
471 473parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
586 590first strand
Strand 2
C
541 549anti-parallel
Strand 3
C
530 538anti-parallel
Strand 4
C
609 612parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
578 582first strand
Strand 2
C
565 571anti-parallel
Strand 3
C
598 600anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il