Analysis of interatomic Contacts of Structural Units in PDB entry:
3MDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MDM entry

There is 1 chain in PDB entry 3MDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 57TRP 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3MDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 72Right-handed alpha
Helix 2
2
A
89 98Right-handed alpha
Helix 3
3
A
105 113Right-handed alpha
Helix 4
4
A
130 142Right-handed alpha
Helix 5
5
A
143 145Right-handed 310
Helix 6
6
A
146 152Right-handed alpha
Helix 7
7
A
153 171Right-handed alpha
Helix 8
8
A
180 198Right-handed alpha
Helix 9
9
A
202 206Right-handed 310
Helix 10
10
A
208 228Right-handed alpha
Helix 11
11
A
229 235Right-handed 310
Helix 12
12
A
236 267Right-handed alpha
Helix 13
13
A
274 283Right-handed alpha
Helix 14
14
A
289 303Right-handed alpha
Helix 15
15
A
304 319Right-handed alpha
Helix 16
16
A
321 336Right-handed alpha
Helix 17
17
A
343 350Right-handed alpha
Helix 18
18
A
350 364Right-handed alpha
Helix 19
19
A
394 400Right-handed alpha
Helix 20
20
A
412 417Right-handed 310
Helix 21
21
A
432 436Right-handed 310
Helix 22
22
A
439 457Right-handed alpha
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There are 5 sheets in PDB entry 3MDM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
82 87anti-parallel
Strand 3
A
389 393parallel
Strand 4
A
370 374anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
118 119anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
483 488anti-parallel
Strand 3
A
458 462anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
383 385anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 472first strand
Strand 2
A
476 478anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il