Analysis of interatomic Contacts of Structural Units in PDB entry:
3MH7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MH7 entry

There are 3 chains in PDB entry 3MH7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 11GLN 448
B
UNK 102UNK 106
C
UNK 503UNK 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3MH7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 23Right-handed alpha
Helix 2
2
A
104 108Right-handed alpha
Helix 3
3
A
154 158Right-handed 310
Helix 4
4
A
169 173Right-handed 310
Helix 5
5
A
231 234Right-handed 310
Helix 6
6
A
244 258Right-handed alpha
Helix 7
7
A
273 280Right-handed alpha
Helix 8
8
A
297 303Right-handed alpha
Helix 9
9
A
320 329Right-handed alpha
Helix 10
10
A
363 369Right-handed alpha
Helix 11
11
A
396 400Right-handed 310
Helix 12
12
A
417 427Right-handed alpha
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There are 6 sheets in PDB entry 3MH7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
26 33first strand
Strand 2
A
84 94anti-parallel
Strand 3
A
99 103anti-parallel
Strand 4
A
136 141anti-parallel
Strand 5
A
122 131anti-parallel
Strand 6
A
110 116anti-parallel
Strand 7
A
26 33anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
103 105first strand
Strand 2
A
221 229anti-parallel
Strand 3
A
239 243anti-parallel
Strand 4
A
198 201anti-parallel
Strand 5
A
176 187anti-parallel
Strand 6
A
163 168anti-parallel
Strand 7
A
213 215anti-parallel
Strand 8
A
221 229anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
316 317first strand
Strand 2
A
309 313anti-parallel
Strand 3
A
336 343anti-parallel
Strand 4
A
346 353anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
316 317first strand
Strand 2
A
309 313anti-parallel
Strand 3
A
288 293anti-parallel
Strand 4
A
267 271anti-parallel
Strand 5
C
505 506anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
375 377first strand
Strand 2
A
385 389anti-parallel
Strand 3
A
406 407anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
413 414first strand
Strand 2
A
409 410anti-parallel
Strand 3
A
433 438anti-parallel
Strand 4
A
441 446anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il