Analysis of interatomic Contacts of Structural Units in PDB entry:
3MJ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3MJ4 entry

There are 10 chains in PDB entry 3MJ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 25	GLY 389
B	LYS 28	GLN 390
C	LYS 28	GLN 390
D	PHE 30	GLN 388
E	GLY 29	GLY 389
F	LYS 28	PRO 391
G	SER 27	GLY 389
H	SER 27	GLN 390
I	GLU 26	GLY 389
J	SER 27	GLY 389

There are147 helices in PDB entry 3MJ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	38	51	Right-handed alpha
Helix 2	2	A	65	69	Right-handed 310
Helix 3	3	A	91	99	Right-handed alpha
Helix 4	4	A	100	102	Right-handed 310
Helix 5	5	A	125	134	Right-handed alpha
Helix 6	6	A	138	150	Right-handed alpha
Helix 7	7	A	158	176	Right-handed alpha
Helix 8	8	A	176	185	Right-handed alpha
Helix 9	9	A	187	191	Right-handed 310
Helix 10	10	A	195	199	Right-handed 310
Helix 11	11	A	221	230	Right-handed alpha
Helix 12	12	A	242	247	Right-handed alpha
Helix 13	13	A	260	265	Right-handed alpha
Helix 14	14	A	309	314	Right-handed alpha
Helix 15	15	A	339	356	Right-handed alpha
Helix 16	16	A	372	389	Right-handed alpha
Helix 17	17	B	38	51	Right-handed alpha
Helix 18	18	B	65	69	Right-handed 310
Helix 19	19	B	91	99	Right-handed alpha
Helix 20	20	B	125	134	Right-handed alpha
Helix 21	21	B	138	148	Right-handed alpha
Helix 22	22	B	169	176	Right-handed alpha
Helix 23	23	B	176	185	Right-handed alpha
Helix 24	24	B	221	230	Right-handed alpha
Helix 25	25	B	242	250	Right-handed 310
Helix 26	26	B	260	265	Right-handed alpha
Helix 27	27	B	309	314	Right-handed alpha
Helix 28	28	B	339	356	Right-handed alpha
Helix 29	29	B	372	387	Right-handed alpha
Helix 30	30	C	38	51	Right-handed alpha
Helix 31	31	C	65	69	Right-handed 310
Helix 32	32	C	91	99	Right-handed alpha
Helix 33	33	C	125	134	Right-handed alpha
Helix 34	34	C	138	150	Right-handed alpha
Helix 35	35	C	158	176	Right-handed alpha
Helix 36	36	C	176	185	Right-handed alpha
Helix 37	37	C	187	191	Right-handed 310
Helix 38	38	C	221	230	Right-handed alpha
Helix 39	39	C	242	248	Right-handed alpha
Helix 40	40	C	260	265	Right-handed alpha
Helix 41	41	C	309	314	Right-handed alpha
Helix 42	42	C	339	356	Right-handed alpha
Helix 43	43	C	363	368	Right-handed alpha
Helix 44	44	C	372	388	Right-handed alpha
Helix 45	45	D	38	51	Right-handed alpha
Helix 46	46	D	65	69	Right-handed 310
Helix 47	47	D	91	99	Right-handed alpha
Helix 48	48	D	125	134	Right-handed alpha
Helix 49	49	D	138	148	Right-handed alpha
Helix 50	50	D	158	176	Right-handed alpha
Helix 51	51	D	176	185	Right-handed alpha
Helix 52	52	D	195	199	Right-handed 310
Helix 53	53	D	221	230	Right-handed alpha
Helix 54	54	D	242	250	Right-handed 310
Helix 55	55	D	260	265	Right-handed alpha
Helix 56	56	D	309	314	Right-handed alpha
Helix 57	57	D	339	356	Right-handed alpha
Helix 58	58	D	372	388	Right-handed alpha
Helix 59	59	E	38	50	Right-handed alpha
Helix 60	60	E	65	69	Right-handed 310
Helix 61	61	E	91	99	Right-handed alpha
Helix 62	62	E	125	134	Right-handed alpha
Helix 63	63	E	138	150	Right-handed alpha
Helix 64	64	E	158	176	Right-handed alpha
Helix 65	65	E	176	185	Right-handed alpha
Helix 66	66	E	195	199	Right-handed 310
Helix 67	67	E	221	230	Right-handed alpha
Helix 68	68	E	243	248	Right-handed alpha
Helix 69	69	E	260	265	Right-handed alpha
Helix 70	70	E	309	314	Right-handed alpha
Helix 71	71	E	339	356	Right-handed alpha
Helix 72	72	E	372	387	Right-handed alpha
Helix 73	73	F	38	51	Right-handed alpha
Helix 74	74	F	65	69	Right-handed 310
Helix 75	75	F	91	99	Right-handed alpha
Helix 76	76	F	125	134	Right-handed alpha
Helix 77	77	F	138	150	Right-handed alpha
Helix 78	78	F	158	168	Right-handed alpha
Helix 79	79	F	168	176	Right-handed alpha
Helix 80	80	F	176	185	Right-handed alpha
Helix 81	81	F	187	191	Right-handed 310
Helix 82	82	F	193	198	Right-handed alpha
Helix 83	83	F	221	230	Right-handed alpha
Helix 84	84	F	243	248	Right-handed alpha
Helix 85	85	F	260	265	Right-handed alpha
Helix 86	86	F	309	314	Right-handed alpha
Helix 87	87	F	339	356	Right-handed alpha
Helix 88	88	F	372	390	Right-handed alpha
Helix 89	89	G	38	51	Right-handed alpha
Helix 90	90	G	65	69	Right-handed 310
Helix 91	91	G	91	100	Right-handed alpha
Helix 92	92	G	125	134	Right-handed alpha
Helix 93	93	G	138	150	Right-handed alpha
Helix 94	94	G	158	168	Right-handed alpha
Helix 95	95	G	168	176	Right-handed alpha
Helix 96	96	G	176	185	Right-handed alpha
Helix 97	97	G	192	197	Right-handed alpha
Helix 98	98	G	221	230	Right-handed alpha
Helix 99	99	G	243	248	Right-handed alpha
Helix 100	100	G	260	265	Right-handed alpha
Helix 101	101	G	309	314	Right-handed alpha
Helix 102	102	G	339	355	Right-handed alpha
Helix 103	103	G	372	389	Right-handed alpha
Helix 104	104	H	38	51	Right-handed alpha
Helix 105	105	H	65	69	Right-handed 310
Helix 106	106	H	91	100	Right-handed alpha
Helix 107	107	H	125	134	Right-handed alpha
Helix 108	108	H	138	150	Right-handed alpha
Helix 109	109	H	158	168	Right-handed alpha
Helix 110	110	H	168	176	Right-handed alpha
Helix 111	111	H	176	185	Right-handed alpha
Helix 112	112	H	193	198	Right-handed alpha
Helix 113	113	H	221	230	Right-handed alpha
Helix 114	114	H	242	246	Right-handed 310
Helix 115	115	H	260	265	Right-handed alpha
Helix 116	116	H	309	314	Right-handed alpha
Helix 117	117	H	339	356	Right-handed alpha
Helix 118	118	H	372	389	Right-handed alpha
Helix 119	119	I	38	51	Right-handed alpha
Helix 120	120	I	65	69	Right-handed 310
Helix 121	121	I	91	99	Right-handed alpha
Helix 122	122	I	125	134	Right-handed alpha
Helix 123	123	I	138	148	Right-handed alpha
Helix 124	124	I	158	176	Right-handed alpha
Helix 125	125	I	176	185	Right-handed alpha
Helix 126	126	I	195	199	Right-handed 310
Helix 127	127	I	221	230	Right-handed alpha
Helix 128	128	I	242	246	Right-handed 310
Helix 129	129	I	260	265	Right-handed alpha
Helix 130	130	I	309	314	Right-handed alpha
Helix 131	131	I	339	356	Right-handed alpha
Helix 132	132	I	372	389	Right-handed alpha
Helix 133	133	J	38	51	Right-handed alpha
Helix 134	134	J	65	69	Right-handed 310
Helix 135	135	J	91	99	Right-handed alpha
Helix 136	136	J	125	134	Right-handed alpha
Helix 137	137	J	138	148	Right-handed alpha
Helix 138	138	J	160	176	Right-handed alpha
Helix 139	139	J	176	185	Right-handed alpha
Helix 140	140	J	187	191	Right-handed 310
Helix 141	141	J	193	198	Right-handed alpha
Helix 142	142	J	221	230	Right-handed alpha
Helix 143	143	J	242	247	Right-handed alpha
Helix 144	144	J	260	265	Right-handed alpha
Helix 145	145	J	309	314	Right-handed alpha
Helix 146	146	J	339	356	Right-handed alpha
Helix 147	147	J	372	387	Right-handed alpha

There are 37 sheets in PDB entry 3MJ4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	239	first strand
Strand 2	A	55	59	parallel
Strand 3	A	32	35	parallel
Strand 4	A	255	257	parallel
Strand 5	A	359	361	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	78	79	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	214	218	anti-parallel
Strand 3	A	104	106	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	122	first strand
Strand 2	A	111	115	anti-parallel
Strand 3	A	294	296	parallel
Strand 4	A	305	308	anti-parallel
Strand 5	A	320	328	anti-parallel
Strand 6	A	274	284	anti-parallel
Strand 7	A	335	336	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	238	first strand
Strand 2	B	55	58	parallel
Strand 3	B	30	35	parallel
Strand 4	B	252	257	parallel
Strand 5	B	359	361	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	78	79	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	104	106	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	121	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	294	296	parallel
Strand 4	B	305	308	anti-parallel
Strand 5	B	320	328	anti-parallel
Strand 6	B	274	284	anti-parallel
Strand 7	B	335	336	anti-parallel

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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	361	first strand
Strand 2	C	252	257	parallel
Strand 3	C	30	35	parallel
Strand 4	C	55	59	parallel
Strand 5	C	235	239	parallel
Strand 6	F	235	239	anti-parallel
Strand 7	F	55	59	parallel
Strand 8	F	30	35	parallel
Strand 9	F	252	257	parallel
Strand 10	F	359	361	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	78	79	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	106	first strand
Strand 2	C	216	218	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	111	115	anti-parallel
Strand 3	C	294	296	parallel
Strand 4	C	305	308	anti-parallel
Strand 5	C	320	328	anti-parallel
Strand 6	C	274	284	anti-parallel
Strand 7	C	335	336	anti-parallel

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There are 10 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	361	first strand
Strand 2	D	254	257	parallel
Strand 3	D	32	35	parallel
Strand 4	D	55	58	parallel
Strand 5	D	235	239	parallel
Strand 6	J	235	239	anti-parallel
Strand 7	J	55	58	parallel
Strand 8	J	30	35	parallel
Strand 9	J	252	257	parallel
Strand 10	J	359	361	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	78	79	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	89	first strand
Strand 2	D	214	218	anti-parallel
Strand 3	D	104	106	anti-parallel

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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	121	first strand
Strand 2	D	111	115	anti-parallel
Strand 3	D	294	296	parallel
Strand 4	D	305	308	anti-parallel
Strand 5	D	320	328	anti-parallel
Strand 6	D	274	284	anti-parallel
Strand 7	D	335	336	anti-parallel

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There are 10 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	359	361	first strand
Strand 2	E	255	257	parallel
Strand 3	E	32	35	parallel
Strand 4	E	55	59	parallel
Strand 5	E	235	239	parallel
Strand 6	G	235	239	anti-parallel
Strand 7	G	55	58	parallel
Strand 8	G	30	35	parallel
Strand 9	G	252	257	parallel
Strand 10	G	359	361	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	78	79	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	89	first strand
Strand 2	E	214	218	anti-parallel
Strand 3	E	104	106	anti-parallel

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There are 7 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	121	first strand
Strand 2	E	111	115	anti-parallel
Strand 3	E	294	296	parallel
Strand 4	E	305	308	anti-parallel
Strand 5	E	320	328	anti-parallel
Strand 6	E	274	284	anti-parallel
Strand 7	E	335	336	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	72	first strand
Strand 2	F	78	79	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	89	first strand
Strand 2	F	214	218	anti-parallel
Strand 3	F	104	106	anti-parallel

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There are 7 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	121	first strand
Strand 2	F	111	115	anti-parallel
Strand 3	F	294	296	parallel
Strand 4	F	305	308	anti-parallel
Strand 5	F	320	328	anti-parallel
Strand 6	F	274	284	anti-parallel
Strand 7	F	335	336	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	71	72	first strand
Strand 2	G	78	79	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	88	89	first strand
Strand 2	G	214	218	anti-parallel
Strand 3	G	104	106	anti-parallel

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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	121	first strand
Strand 2	G	111	115	anti-parallel
Strand 3	G	294	296	parallel
Strand 4	G	305	308	anti-parallel
Strand 5	G	320	328	anti-parallel
Strand 6	G	274	284	anti-parallel
Strand 7	G	335	336	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	235	239	first strand
Strand 2	H	55	59	parallel
Strand 3	H	30	35	parallel
Strand 4	H	252	257	parallel
Strand 5	H	359	361	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	72	first strand
Strand 2	H	78	79	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	88	89	first strand
Strand 2	H	214	218	anti-parallel
Strand 3	H	104	106	anti-parallel

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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	122	first strand
Strand 2	H	111	115	anti-parallel
Strand 3	H	294	296	parallel
Strand 4	H	305	308	anti-parallel
Strand 5	H	320	328	anti-parallel
Strand 6	H	274	284	anti-parallel
Strand 7	H	335	336	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	235	238	first strand
Strand 2	I	55	58	parallel
Strand 3	I	30	35	parallel
Strand 4	I	252	257	parallel
Strand 5	I	359	361	parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	71	72	first strand
Strand 2	I	78	79	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	88	89	first strand
Strand 2	I	214	218	anti-parallel
Strand 3	I	104	106	anti-parallel

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There are 7 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	118	122	first strand
Strand 2	I	111	115	anti-parallel
Strand 3	I	294	296	parallel
Strand 4	I	305	308	anti-parallel
Strand 5	I	320	328	anti-parallel
Strand 6	I	274	284	anti-parallel
Strand 7	I	335	336	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	71	72	first strand
Strand 2	J	78	79	anti-parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	88	89	first strand
Strand 2	J	214	218	anti-parallel
Strand 3	J	104	106	anti-parallel

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There are 7 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	118	122	first strand
Strand 2	J	111	115	anti-parallel
Strand 3	J	294	296	parallel
Strand 4	J	305	308	anti-parallel
Strand 5	J	320	328	anti-parallel
Strand 6	J	274	284	anti-parallel
Strand 7	J	335	336	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3MJ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
3MJ4