Analysis of interatomic Contacts of Structural Units in PDB entry:
3ML9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ML9 entry

There is 1 chain in PDB entry 3ML9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 144GLY 1093
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 3ML9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
145 159Right-handed alpha
Helix 2
2
A
171 191Right-handed alpha
Helix 3
3
A
192 199Right-handed alpha
Helix 4
4
A
208 213Right-handed alpha
Helix 5
5
A
241 245Right-handed 310
Helix 6
6
A
286 289Right-handed 310
Helix 7
7
A
290 299Right-handed alpha
Helix 8
8
A
312 317Right-handed 310
Helix 9
9
A
355 357Right-handed 310
Helix 10
10
A
421 423Right-handed 310
Helix 11
11
A
498 503Right-handed 310
Helix 12
12
A
549 561Right-handed alpha
Helix 13
13
A
568 578Right-handed alpha
Helix 14
14
A
578 583Right-handed alpha
Helix 15
15
A
585 587Right-handed 310
Helix 16
16
A
588 593Right-handed alpha
Helix 17
17
A
600 613Right-handed alpha
Helix 18
18
A
614 620Right-handed alpha
Helix 19
19
A
623 631Right-handed alpha
Helix 20
20
A
637 649Right-handed alpha
Helix 21
21
A
652 667Right-handed alpha
Helix 22
22
A
668 670Right-handed 310
Helix 23
23
A
675 688Right-handed alpha
Helix 24
24
A
688 706Right-handed alpha
Helix 25
25
A
709 725Right-handed alpha
Helix 26
26
A
725 751Right-handed alpha
Helix 27
27
A
762 775Right-handed alpha
Helix 28
28
A
838 858Right-handed alpha
Helix 29
29
A
888 894Right-handed alpha
Helix 30
30
A
905 914Right-handed alpha
Helix 31
31
A
917 942Right-handed alpha
Helix 32
32
A
948 950Right-handed 310
Helix 33
33
A
964 970Right-handed alpha
Helix 34
34
A
988 995Right-handed alpha
Helix 35
35
A
1003 1022Right-handed alpha
Helix 36
36
A
1023 1038Right-handed alpha
Helix 37
37
A
1049 1056Right-handed alpha
Helix 38
38
A
1060 1079Right-handed alpha
Helix 39
39
A
1080 1093Right-handed alpha
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There are 8 sheets in PDB entry 3ML9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 235first strand
Strand 2
A
220 224anti-parallel
Strand 3
A
303 305parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
527 528parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 419first strand
Strand 2
A
360 369anti-parallel
Strand 3
A
515 520anti-parallel
Strand 4
A
478 483anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 398first strand
Strand 2
A
380 389anti-parallel
Strand 3
A
402 403anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 398first strand
Strand 2
A
380 389anti-parallel
Strand 3
A
428 434anti-parallel
Strand 4
A
460 467anti-parallel
Strand 5
A
485 486anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
793 796first strand
Strand 2
A
811 817anti-parallel
Strand 3
A
802 803anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
793 796first strand
Strand 2
A
811 817anti-parallel
Strand 3
A
828 834anti-parallel
Strand 4
A
876 880anti-parallel
Strand 5
A
869 873anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
885 887first strand
Strand 2
A
952 955anti-parallel
Strand 3
A
960 962anti-parallel
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