Analysis of interatomic Contacts of Structural Units in PDB entry:
3MP4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3MP4 entry

There are 6 chains in PDB entry 3MP4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 28	CYS 323
B	THR 28	CYS 323
C	THR 28	CYS 323
D	THR 28	CYS 323
E	THR 28	CYS 323
F	THR 28	CYS 323

There are 84 helices in PDB entry 3MP4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	41	46	Right-handed alpha
Helix 2	2	A	52	66	Right-handed alpha
Helix 3	3	A	82	86	Right-handed 310
Helix 4	4	A	87	95	Right-handed alpha
Helix 5	5	A	109	119	Right-handed alpha
Helix 6	6	A	131	138	Right-handed alpha
Helix 7	7	A	142	160	Right-handed alpha
Helix 8	8	A	181	195	Right-handed alpha
Helix 9	9	A	210	225	Right-handed alpha
Helix 10	10	A	226	228	Right-handed 310
Helix 11	11	A	240	251	Right-handed alpha
Helix 12	12	A	277	288	Right-handed alpha
Helix 13	13	A	295	311	Right-handed alpha
Helix 14	14	A	316	323	Right-handed alpha
Helix 15	15	B	41	46	Right-handed alpha
Helix 16	16	B	52	67	Right-handed alpha
Helix 17	17	B	82	86	Right-handed 310
Helix 18	18	B	87	95	Right-handed alpha
Helix 19	19	B	109	119	Right-handed alpha
Helix 20	20	B	131	139	Right-handed alpha
Helix 21	21	B	142	160	Right-handed alpha
Helix 22	22	B	181	195	Right-handed alpha
Helix 23	23	B	210	225	Right-handed alpha
Helix 24	24	B	226	228	Right-handed 310
Helix 25	25	B	240	251	Right-handed alpha
Helix 26	26	B	277	288	Right-handed alpha
Helix 27	27	B	295	311	Right-handed alpha
Helix 28	28	B	316	323	Right-handed alpha
Helix 29	29	C	41	46	Right-handed alpha
Helix 30	30	C	52	67	Right-handed alpha
Helix 31	31	C	82	86	Right-handed 310
Helix 32	32	C	87	95	Right-handed alpha
Helix 33	33	C	109	119	Right-handed alpha
Helix 34	34	C	131	139	Right-handed alpha
Helix 35	35	C	142	161	Right-handed alpha
Helix 36	36	C	181	196	Right-handed alpha
Helix 37	37	C	210	225	Right-handed alpha
Helix 38	38	C	226	228	Right-handed 310
Helix 39	39	C	240	251	Right-handed alpha
Helix 40	40	C	277	289	Right-handed alpha
Helix 41	41	C	295	309	Right-handed alpha
Helix 42	42	C	316	323	Right-handed alpha
Helix 43	43	D	41	46	Right-handed alpha
Helix 44	44	D	52	66	Right-handed alpha
Helix 45	45	D	82	86	Right-handed 310
Helix 46	46	D	87	95	Right-handed alpha
Helix 47	47	D	109	119	Right-handed alpha
Helix 48	48	D	131	140	Right-handed alpha
Helix 49	49	D	142	160	Right-handed alpha
Helix 50	50	D	181	196	Right-handed alpha
Helix 51	51	D	210	225	Right-handed alpha
Helix 52	52	D	226	228	Right-handed 310
Helix 53	53	D	240	251	Right-handed alpha
Helix 54	54	D	277	288	Right-handed alpha
Helix 55	55	D	295	311	Right-handed alpha
Helix 56	56	D	316	323	Right-handed alpha
Helix 57	57	E	41	46	Right-handed alpha
Helix 58	58	E	52	67	Right-handed alpha
Helix 59	59	E	82	86	Right-handed 310
Helix 60	60	E	87	95	Right-handed alpha
Helix 61	61	E	109	119	Right-handed alpha
Helix 62	62	E	131	140	Right-handed alpha
Helix 63	63	E	142	160	Right-handed alpha
Helix 64	64	E	181	196	Right-handed alpha
Helix 65	65	E	210	225	Right-handed alpha
Helix 66	66	E	226	228	Right-handed 310
Helix 67	67	E	240	251	Right-handed alpha
Helix 68	68	E	277	288	Right-handed alpha
Helix 69	69	E	295	311	Right-handed alpha
Helix 70	70	E	316	323	Right-handed alpha
Helix 71	71	F	43	47	Right-handed 310
Helix 72	72	F	52	66	Right-handed alpha
Helix 73	73	F	87	95	Right-handed alpha
Helix 74	74	F	109	118	Right-handed alpha
Helix 75	75	F	131	137	Right-handed alpha
Helix 76	76	F	142	147	Right-handed alpha
Helix 77	77	F	147	160	Right-handed alpha
Helix 78	78	F	181	196	Right-handed alpha
Helix 79	79	F	210	225	Right-handed alpha
Helix 80	80	F	226	228	Right-handed 310
Helix 81	81	F	240	251	Right-handed alpha
Helix 82	82	F	277	288	Right-handed alpha
Helix 83	83	F	295	310	Right-handed alpha
Helix 84	84	F	316	323	Right-handed alpha

There are 10 sheets in PDB entry 3MP4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	34	37	parallel
Strand 3	A	255	258	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	123	129	parallel
Strand 3	A	163	169	parallel
Strand 4	A	199	204	parallel
Strand 5	A	230	234	parallel

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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	34	37	parallel
Strand 3	B	255	258	parallel
Strand 4	B	230	234	parallel
Strand 5	B	199	204	parallel
Strand 6	B	163	169	parallel
Strand 7	B	123	125	parallel
Strand 8	B	105	106	parallel
Strand 9	B	74	75	parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	34	37	parallel
Strand 3	B	255	258	parallel
Strand 4	B	230	234	parallel
Strand 5	B	199	204	parallel
Strand 6	B	163	169	parallel
Strand 7	B	128	129	parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	34	37	parallel
Strand 3	C	255	258	parallel
Strand 4	C	230	234	parallel
Strand 5	C	199	204	parallel
Strand 6	C	163	169	parallel
Strand 7	C	123	129	parallel
Strand 8	C	105	106	parallel
Strand 9	C	74	75	parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	71	first strand
Strand 2	D	34	37	parallel
Strand 3	D	255	258	parallel
Strand 4	D	230	234	parallel
Strand 5	D	199	204	parallel
Strand 6	D	163	169	parallel
Strand 7	D	123	129	parallel
Strand 8	D	105	106	parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	71	first strand
Strand 2	E	34	37	parallel
Strand 3	E	255	258	parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	75	first strand
Strand 2	E	105	106	parallel
Strand 3	E	123	129	parallel
Strand 4	E	163	169	parallel
Strand 5	E	199	204	parallel
Strand 6	E	230	234	parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	71	first strand
Strand 2	F	34	37	parallel
Strand 3	F	255	258	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	105	106	first strand
Strand 2	F	123	129	parallel
Strand 3	F	163	169	parallel
Strand 4	F	199	204	parallel
Strand 5	F	230	234	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3MP4

Analysis of interatomic Contacts of Structural Units in PDB entry:
3MP4