Analysis of interatomic Contacts of Structural Units in PDB entry:
3MP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MP6 entry

There are 2 chains in PDB entry 3MP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 738ALA 1254
P
 ALA 1THR 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3MP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
754 770Right-handed alpha
Helix 2
2
A
780 791Right-handed alpha
Helix 3
3
A
804 811Right-handed alpha
Helix 4
4
A
820 826Right-handed alpha
Helix 5
5
A
828 835Right-handed alpha
Helix 6
6
A
866 868Right-handed 310
Helix 7
7
A
869 879Right-handed alpha
Helix 8
8
A
891 894Right-handed 310
Helix 9
9
A
895 902Right-handed alpha
Helix 10
10
A
923 939Right-handed alpha
Helix 11
11
A
947 957Right-handed alpha
Helix 12
12
A
966 968Right-handed 310
Helix 13
13
A
969 976Right-handed alpha
Helix 14
14
A
1010 1021Right-handed alpha
Helix 15
15
A
1024 1035Right-handed alpha
Helix 16
16
A
1042 1050Right-handed alpha
Helix 17
17
A
1052 1065Right-handed alpha
Helix 18
18
A
1073 1090Right-handed alpha
Helix 19
19
A
1094 1106Right-handed alpha
Helix 20
20
A
1179 1181Right-handed 310
Helix 21
21
A
1242 1244Right-handed 310
Helix 22
22
A
1249 1254Right-handed alpha
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There are 7 sheets in PDB entry 3MP6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
773 776first strand
Strand 2
A
745 748parallel
Strand 3
A
797 801parallel
Strand 4
A
996 1004anti-parallel
Strand 5
A
844 849anti-parallel
Strand 6
A
1039 1040anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
773 776first strand
Strand 2
A
745 748parallel
Strand 3
A
797 801parallel
Strand 4
A
996 1004anti-parallel
Strand 5
A
1066 1067parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
836 837first strand
Strand 2
A
840 841anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
883 885first strand
Strand 2
A
960 965parallel
Strand 3
A
852 856anti-parallel
Strand 4
A
980 983anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
905 910first strand
Strand 2
A
913 920anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1174 1178first strand
Strand 2
A
1158 1163anti-parallel
Strand 3
A
1144 1153anti-parallel
Strand 4
A
1210 1219anti-parallel
Strand 5
A
1225 1229anti-parallel
Strand 6
A
1239 1241anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1183 1186first strand
Strand 2
A
1130 1133anti-parallel
Strand 3
A
1144 1153anti-parallel
Strand 4
A
1210 1219anti-parallel
Strand 5
A
1200 1204anti-parallel
Strand 6
A
1246 1248anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il