Analysis of interatomic Contacts of Structural Units in PDB entry:
3MUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MUP entry

There are 4 chains in PDB entry 3MUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 254LEU 354
B
 ILE 255LEU 354
C
 SER 254THR 356
D
 SER 254SER 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3MUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
257 261Right-handed 310
Helix 2
2
A
262 269Right-handed alpha
Helix 3
3
A
270 273Right-handed 310
Helix 4
4
A
280 287Right-handed alpha
Helix 5
5
A
315 324Right-handed alpha
Helix 6
6
A
327 335Right-handed alpha
Helix 7
7
A
335 346Right-handed alpha
Helix 8
8
A
348 354Right-handed alpha
Helix 9
9
B
257 261Right-handed 310
Helix 10
10
B
262 269Right-handed alpha
Helix 11
11
B
280 287Right-handed alpha
Helix 12
12
B
315 324Right-handed alpha
Helix 13
13
B
327 346Right-handed alpha
Helix 14
14
B
348 354Right-handed alpha
Helix 15
15
C
257 261Right-handed 310
Helix 16
16
C
262 270Right-handed alpha
Helix 17
17
C
280 287Right-handed alpha
Helix 18
18
C
315 324Right-handed alpha
Helix 19
19
C
327 335Right-handed alpha
Helix 20
20
C
335 346Right-handed alpha
Helix 21
21
C
348 356Right-handed alpha
Helix 22
22
D
257 261Right-handed 310
Helix 23
23
D
262 269Right-handed alpha
Helix 24
24
D
270 273Right-handed 310
Helix 25
25
D
280 287Right-handed alpha
Helix 26
26
D
315 324Right-handed alpha
Helix 27
27
D
327 335Right-handed alpha
Helix 28
28
D
335 346Right-handed alpha
Helix 29
29
D
348 355Right-handed alpha
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There are 4 sheets in PDB entry 3MUP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
298 300anti-parallel
Strand 3
A
306 307anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 291first strand
Strand 2
B
298 300anti-parallel
Strand 3
B
306 307anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
289 291first strand
Strand 2
C
298 300anti-parallel
Strand 3
C
306 307anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
289 291first strand
Strand 2
D
298 300anti-parallel
Strand 3
D
306 307anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il