Analysis of interatomic Contacts of Structural Units in PDB entry:
3MVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MVD entry

There are 10 chains in PDB entry 3MVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 37ARG 134
B
LYS 20GLY 101
C
ALA 12LYS 118
D
THR 29ALA 121
E
ARG 40ARG 134
F
ARG 17GLY 102
G
ALA 12LYS 118
H
THR 29ALA 121
I
T 2 T 147
J
A 1 T 51
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3MVD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
44 57Right-handed alpha
Helix 2
2
A
63 77Right-handed alpha
Helix 3
3
A
85 114Right-handed alpha
Helix 4
4
A
120 132Right-handed alpha
Helix 5
5
B
24 29Right-handed 310
Helix 6
6
B
30 42Right-handed alpha
Helix 7
7
B
49 76Right-handed alpha
Helix 8
8
B
82 93Right-handed alpha
Helix 9
9
C
16 21Right-handed alpha
Helix 10
10
C
26 36Right-handed alpha
Helix 11
11
C
45 73Right-handed alpha
Helix 12
12
C
79 90Right-handed alpha
Helix 13
13
C
90 97Right-handed alpha
Helix 14
14
C
112 116Right-handed 310
Helix 15
15
D
34 46Right-handed alpha
Helix 16
16
D
52 81Right-handed alpha
Helix 17
17
D
87 99Right-handed alpha
Helix 18
18
D
100 120Right-handed alpha
Helix 19
19
E
44 57Right-handed alpha
Helix 20
20
E
63 77Right-handed alpha
Helix 21
21
E
85 114Right-handed alpha
Helix 22
22
E
120 132Right-handed alpha
Helix 23
23
F
24 29Right-handed 310
Helix 24
24
F
30 41Right-handed alpha
Helix 25
25
F
49 76Right-handed alpha
Helix 26
26
F
82 93Right-handed alpha
Helix 27
27
G
16 21Right-handed alpha
Helix 28
28
G
26 36Right-handed alpha
Helix 29
29
G
45 72Right-handed alpha
Helix 30
30
G
79 89Right-handed alpha
Helix 31
31
G
90 97Right-handed alpha
Helix 32
32
G
112 116Right-handed 310
Helix 33
33
H
34 46Right-handed alpha
Helix 34
34
H
52 81Right-handed alpha
Helix 35
35
H
87 99Right-handed alpha
Helix 36
36
H
100 121Right-handed alpha
Helix 37
37
K
320 324Right-handed 310
Helix 38
38
L
320 324Right-handed 310
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There are 26 sheets in PDB entry 3MVD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
83 84first strand
Strand 2
B
80 81parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
118 119first strand
Strand 2
B
45 46parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
96 98first strand
Strand 2
G
100 102parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
42 43first strand
Strand 2
D
85 86parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
77 78first strand
Strand 2
D
50 51parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
100 102first strand
Strand 2
F
96 98parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
83 84first strand
Strand 2
F
80 81parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
118 119first strand
Strand 2
F
45 46parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
42 43first strand
Strand 2
H
85 86parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
77 78first strand
Strand 2
H
50 51parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
63 69first strand
Strand 2
K
42 49anti-parallel
Strand 3
K
410 416anti-parallel
Strand 4
K
401 406anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
76 81first strand
Strand 2
K
85 90anti-parallel
Strand 3
K
95 99anti-parallel
Strand 4
K
120 121anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
128 133first strand
Strand 2
K
137 142anti-parallel
Strand 3
K
147 151anti-parallel
Strand 4
K
168 173anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
153 154first strand
Strand 2
K
159 161anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
180 185first strand
Strand 2
K
189 194anti-parallel
Strand 3
K
199 203anti-parallel
Strand 4
K
233 235anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
243 249first strand
Strand 2
K
252 257anti-parallel
Strand 3
K
263 268anti-parallel
Strand 4
K
283 290anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
295 300first strand
Strand 2
K
304 309anti-parallel
Strand 3
K
314 318anti-parallel
Strand 4
K
334 339anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
347 353first strand
Strand 2
K
356 361anti-parallel
Strand 3
K
366 370anti-parallel
Strand 4
K
385 390anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
63 69first strand
Strand 2
L
42 49anti-parallel
Strand 3
L
410 416anti-parallel
Strand 4
L
401 406anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
76 81first strand
Strand 2
L
85 90anti-parallel
Strand 3
L
95 99anti-parallel
Strand 4
L
120 121anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
128 133first strand
Strand 2
L
137 142anti-parallel
Strand 3
L
147 151anti-parallel
Strand 4
L
168 173anti-parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
153 155first strand
Strand 2
L
158 161anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
180 185first strand
Strand 2
L
189 194anti-parallel
Strand 3
L
199 203anti-parallel
Strand 4
L
233 235anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
243 248first strand
Strand 2
L
252 257anti-parallel
Strand 3
L
263 268anti-parallel
Strand 4
L
283 290anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
295 300first strand
Strand 2
L
304 309anti-parallel
Strand 3
L
314 318anti-parallel
Strand 4
L
334 339anti-parallel
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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
347 353first strand
Strand 2
L
356 361anti-parallel
Strand 3
L
366 370anti-parallel
Strand 4
L
385 390anti-parallel
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