Analysis of interatomic Contacts of Structural Units in PDB entry:
3MY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MY9 entry

There is 1 chain in PDB entry 3MY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3MY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 72Right-handed alpha
Helix 2
2
A
74 79Right-handed alpha
Helix 3
3
A
85 97Right-handed alpha
Helix 4
4
A
100 120Right-handed alpha
Helix 5
5
A
124 128Right-handed 310
Helix 6
6
A
145 157Right-handed alpha
Helix 7
7
A
172 188Right-handed alpha
Helix 8
8
A
189 191Right-handed 310
Helix 9
9
A
205 215Right-handed alpha
Helix 10
10
A
229 240Right-handed alpha
Helix 11
11
A
252 263Right-handed alpha
Helix 12
12
A
271 276Right-handed alpha
Helix 13
13
A
277 292Right-handed alpha
Helix 14
14
A
303 316Right-handed alpha
Helix 15
15
A
362 370Right-handed alpha
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There are 5 sheets in PDB entry 3MY9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 53first strand
Strand 2
A
34 43anti-parallel
Strand 3
A
7 17anti-parallel
Strand 4
A
371 373anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
332 333anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
348 350anti-parallel
Strand 3
A
344 345anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
163 167parallel
Strand 3
A
192 196parallel
Strand 4
A
221 222parallel
Strand 5
A
244 246parallel
Strand 6
A
267 269parallel
Strand 7
A
295 296parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
325 326parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il