Analysis of interatomic Contacts of Structural Units in PDB entry:
3MYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MYV entry

There are 2 chains in PDB entry 3MYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 36ASN 480
B
 PHE 36LYS 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 3MYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 54Right-handed alpha
Helix 2
2
A
61 70Right-handed alpha
Helix 3
3
A
81 88Right-handed alpha
Helix 4
4
A
102 121Right-handed alpha
Helix 5
5
A
128 155Right-handed alpha
Helix 6
6
A
157 161Right-handed 310
Helix 7
7
A
186 204Right-handed alpha
Helix 8
8
A
214 229Right-handed alpha
Helix 9
9
A
231 250Right-handed alpha
Helix 10
10
A
256 269Right-handed 310
Helix 11
11
A
290 295Right-handed alpha
Helix 12
12
A
306 315Right-handed alpha
Helix 13
13
A
319 323Right-handed 310
Helix 14
14
A
360 375Right-handed alpha
Helix 15
15
A
375 394Right-handed alpha
Helix 16
16
A
400 404Right-handed 310
Helix 17
17
A
405 418Right-handed alpha
Helix 18
18
A
422 430Right-handed alpha
Helix 19
19
A
453 457Right-handed 310
Helix 20
20
A
461 466Right-handed 310
Helix 21
21
B
38 54Right-handed alpha
Helix 22
22
B
61 70Right-handed alpha
Helix 23
23
B
81 89Right-handed alpha
Helix 24
24
B
102 121Right-handed alpha
Helix 25
25
B
128 155Right-handed alpha
Helix 26
26
B
157 161Right-handed 310
Helix 27
27
B
186 204Right-handed alpha
Helix 28
28
B
214 229Right-handed alpha
Helix 29
29
B
231 250Right-handed alpha
Helix 30
30
B
256 265Right-handed 310
Helix 31
31
B
286 289Right-handed 310
Helix 32
32
B
290 296Right-handed alpha
Helix 33
33
B
306 315Right-handed alpha
Helix 34
34
B
319 323Right-handed 310
Helix 35
35
B
360 375Right-handed alpha
Helix 36
36
B
375 394Right-handed alpha
Helix 37
37
B
400 404Right-handed 310
Helix 38
38
B
405 418Right-handed alpha
Helix 39
39
B
422 429Right-handed alpha
Helix 40
40
B
453 457Right-handed 310
Helix 41
41
B
463 468Right-handed alpha
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There are 10 sheets in PDB entry 3MYV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
303 305anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
183 185anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 278first strand
Strand 2
A
355 359anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 330first strand
Strand 2
A
333 338anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 435first strand
Strand 2
A
448 449anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
303 305anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 169first strand
Strand 2
B
183 185anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 278first strand
Strand 2
B
355 359anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 330first strand
Strand 2
B
333 338anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
434 435first strand
Strand 2
B
448 449anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il