Analysis of interatomic Contacts of Structural Units in PDB entry:
3N6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N6J entry

There are 3 chains in PDB entry 3N6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 6ARG 447
B
GLN 6GLY 449
C
GLN 6HIS 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 78 helices in PDB entry 3N6J. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
59 68Right-handed alpha
Helix 2
2
A
69 73Right-handed 310
Helix 3
3
A
77 79Right-handed 310
Helix 4
4
A
80 103Right-handed alpha
Helix 5
5
A
110 130Right-handed alpha
Helix 6
6
A
132 136Right-handed 310
Helix 7
7
A
157 161Right-handed 310
Helix 8
8
A
173 179Right-handed alpha
Helix 9
9
A
185 201Right-handed alpha
Helix 10
10
A
213 228Right-handed alpha
Helix 11
11
A
242 251Right-handed alpha
Helix 12
12
A
271 284Right-handed alpha
Helix 13
13
A
295 306Right-handed alpha
Helix 14
14
A
314 319Right-handed alpha
Helix 15
15
A
319 334Right-handed alpha
Helix 16
16
A
345 358Right-handed alpha
Helix 17
17
A
369 374Right-handed alpha
Helix 18
18
A
404 417Right-handed alpha
Helix 19
19
A
425 430Right-handed alpha
Helix 20
20
B
59 70Right-handed alpha
Helix 21
21
B
71 73Right-handed 310
Helix 22
22
B
77 79Right-handed 310
Helix 23
23
B
80 91Right-handed alpha
Helix 24
24
B
106 130Right-handed alpha
Helix 25
25
B
132 137Right-handed alpha
Helix 26
26
B
157 161Right-handed 310
Helix 27
27
B
173 179Right-handed alpha
Helix 28
28
B
185 201Right-handed alpha
Helix 29
29
B
213 228Right-handed alpha
Helix 30
30
B
242 251Right-handed alpha
Helix 31
31
B
252 255Right-handed 310
Helix 32
32
B
271 284Right-handed alpha
Helix 33
33
B
295 306Right-handed alpha
Helix 34
34
B
314 319Right-handed alpha
Helix 35
35
B
319 333Right-handed alpha
Helix 36
36
B
345 359Right-handed alpha
Helix 37
37
B
369 374Right-handed alpha
Helix 38
38
B
404 418Right-handed alpha
Helix 39
39
B
428 432Right-handed 310
Helix 40
40
C
59 68Right-handed alpha
Helix 41
41
C
69 74Right-handed alpha
Helix 42
42
C
77 79Right-handed 310
Helix 43
43
C
80 93Right-handed alpha
Helix 44
44
C
93 101Right-handed alpha
Helix 45
45
C
110 130Right-handed alpha
Helix 46
46
C
132 136Right-handed 310
Helix 47
47
C
157 161Right-handed 310
Helix 48
48
C
174 179Right-handed alpha
Helix 49
49
C
185 201Right-handed alpha
Helix 50
50
C
213 228Right-handed alpha
Helix 51
51
C
242 250Right-handed alpha
Helix 52
52
C
271 284Right-handed alpha
Helix 53
53
C
295 305Right-handed alpha
Helix 54
54
C
314 319Right-handed alpha
Helix 55
55
C
319 334Right-handed alpha
Helix 56
56
C
345 359Right-handed alpha
Helix 57
57
C
369 373Right-handed 310
Helix 58
58
C
404 417Right-handed alpha
Helix 59
59
C
425 430Right-handed alpha
Helix 60
60
D
59 74Right-handed alpha
Helix 61
61
D
77 79Right-handed 310
Helix 62
62
D
80 103Right-handed alpha
Helix 63
63
D
105 109Right-handed 310
Helix 64
64
D
110 130Right-handed alpha
Helix 65
65
D
132 137Right-handed alpha
Helix 66
66
D
157 161Right-handed 310
Helix 67
67
D
173 179Right-handed alpha
Helix 68
68
D
185 201Right-handed alpha
Helix 69
69
D
213 228Right-handed alpha
Helix 70
70
D
242 251Right-handed alpha
Helix 71
71
D
271 284Right-handed alpha
Helix 72
72
D
295 305Right-handed alpha
Helix 73
73
D
314 319Right-handed alpha
Helix 74
74
D
319 334Right-handed alpha
Helix 75
75
D
347 357Right-handed alpha
Helix 76
76
D
369 374Right-handed alpha
Helix 77
77
D
404 417Right-handed alpha
Helix 78
78
D
425 430Right-handed alpha
Back to top of page

There are 15 sheets in PDB entry 3N6J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
11 22first strand
Strand 2
A
36 46anti-parallel
Strand 3
A
51 57anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
27 28first strand
Strand 2
A
31 32anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
145 147first strand
Strand 2
A
390 392anti-parallel
Strand 3
A
386 387anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
150 152first strand
Strand 2
A
204 208parallel
Strand 3
A
232 236parallel
Strand 4
A
259 261parallel
Strand 5
A
287 289parallel
Strand 6
A
310 311parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
11 22first strand
Strand 2
B
36 46anti-parallel
Strand 3
B
51 57anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
27 28first strand
Strand 2
B
31 32anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
145 147first strand
Strand 2
B
390 392anti-parallel
Strand 3
B
386 387anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
150 152first strand
Strand 2
B
204 208parallel
Strand 3
B
232 236parallel
Strand 4
B
257 261parallel
Strand 5
B
287 289parallel
Strand 6
B
310 311parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
11 22first strand
Strand 2
C
36 46anti-parallel
Strand 3
C
51 57anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
31 32first strand
Strand 2
C
26 28anti-parallel
Strand 3
C
154 155anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
145 147first strand
Strand 2
C
390 392anti-parallel
Strand 3
C
386 387anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
150 152first strand
Strand 2
C
204 208parallel
Strand 3
C
232 236parallel
Strand 4
C
259 261parallel
Strand 5
C
287 289parallel
Strand 6
C
310 311parallel
Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
11 22first strand
Strand 2
D
36 46anti-parallel
Strand 3
D
51 57anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
145 147first strand
Strand 2
D
390 392anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
150 152first strand
Strand 2
D
204 208parallel
Strand 3
D
232 236parallel
Strand 4
D
257 261parallel
Strand 5
D
287 289parallel
Strand 6
D
310 311parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il