Analysis of interatomic Contacts of Structural Units in PDB entry:
3N84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N84 entry

There are 12 chains in PDB entry 3N84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 55ALA 163
B
 GLU 54THR 159
C
 MET 55ALA 163
D
 GLU 54VAL 154
E
 MET 52GLN 153
F
 ILE 53GLN 153
G
 VAL 2PRO 5
H
 VAL 2PRO 5
I
 VAL 2PRO 5
J
 VAL 2PRO 5
K
 VAL 2PRO 5
L
 VAL 2PRO 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3N84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
66 75Right-handed alpha
Helix 2
2
A
127 135Right-handed alpha
Helix 3
3
B
66 76Right-handed alpha
Helix 4
4
B
127 135Right-handed alpha
Helix 5
5
C
66 75Right-handed alpha
Helix 6
6
C
127 135Right-handed alpha
Helix 7
7
D
66 76Right-handed alpha
Helix 8
8
D
127 135Right-handed alpha
Helix 9
9
E
66 76Right-handed alpha
Helix 10
10
E
127 138Right-handed alpha
Helix 11
11
F
66 75Right-handed alpha
Helix 12
12
F
127 135Right-handed alpha
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There are 6 sheets in PDB entry 3N84. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 87first strand
Strand 2
A
95 101anti-parallel
Strand 3
A
104 112anti-parallel
Strand 4
A
118 119anti-parallel
Strand 5
A
124 125anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 87first strand
Strand 2
B
95 101anti-parallel
Strand 3
B
104 112anti-parallel
Strand 4
B
118 119anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 87first strand
Strand 2
C
95 101anti-parallel
Strand 3
C
104 112anti-parallel
Strand 4
C
118 119anti-parallel
Strand 5
C
124 125anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
83 87first strand
Strand 2
D
95 101anti-parallel
Strand 3
D
104 112anti-parallel
Strand 4
D
118 119anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
61 63first strand
Strand 2
E
83 87parallel
Strand 3
E
95 101anti-parallel
Strand 4
E
104 112anti-parallel
Strand 5
E
118 119anti-parallel
Strand 6
E
124 125anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
83 87first strand
Strand 2
F
95 101anti-parallel
Strand 3
F
104 112anti-parallel
Strand 4
F
118 119anti-parallel
Strand 5
F
124 125anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il