Analysis of interatomic Contacts of Structural Units in PDB entry:
3N8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N8U entry

There are 2 chains in PDB entry 3N8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 33GLN 384
B
 THR 31GLN 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3N8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 37Right-handed 310
Helix 2
2
A
43 71Right-handed alpha
Helix 3
3
A
78 86Right-handed alpha
Helix 4
4
A
93 115Right-handed alpha
Helix 5
5
A
117 126Right-handed alpha
Helix 6
6
A
128 135Right-handed alpha
Helix 7
7
A
143 161Right-handed alpha
Helix 8
8
A
171 180Right-handed alpha
Helix 9
9
A
180 201Right-handed alpha
Helix 10
10
A
204 208Right-handed 310
Helix 11
11
A
211 230Right-handed alpha
Helix 12
12
A
230 238Right-handed alpha
Helix 13
13
A
239 242Right-handed 310
Helix 14
14
A
245 260Right-handed alpha
Helix 15
15
A
260 285Right-handed alpha
Helix 16
16
A
287 307Right-handed alpha
Helix 17
17
A
308 313Right-handed 310
Helix 18
18
A
314 319Right-handed alpha
Helix 19
19
A
320 327Right-handed alpha
Helix 20
20
A
331 342Right-handed alpha
Helix 21
21
A
343 348Right-handed 310
Helix 22
22
A
354 363Right-handed alpha
Helix 23
23
A
365 374Right-handed alpha
Helix 24
24
B
33 37Right-handed 310
Helix 25
25
B
43 71Right-handed alpha
Helix 26
26
B
78 86Right-handed alpha
Helix 27
27
B
93 115Right-handed alpha
Helix 28
28
B
117 126Right-handed alpha
Helix 29
29
B
128 135Right-handed alpha
Helix 30
30
B
138 142Right-handed 310
Helix 31
31
B
143 161Right-handed alpha
Helix 32
32
B
171 180Right-handed alpha
Helix 33
33
B
180 200Right-handed alpha
Helix 34
34
B
204 208Right-handed 310
Helix 35
35
B
211 230Right-handed alpha
Helix 36
36
B
230 238Right-handed alpha
Helix 37
37
B
239 242Right-handed 310
Helix 38
38
B
245 260Right-handed alpha
Helix 39
39
B
260 285Right-handed alpha
Helix 40
40
B
287 307Right-handed alpha
Helix 41
41
B
308 313Right-handed 310
Helix 42
42
B
314 319Right-handed alpha
Helix 43
43
B
320 327Right-handed alpha
Helix 44
44
B
331 342Right-handed alpha
Helix 45
45
B
343 348Right-handed 310
Helix 46
46
B
354 363Right-handed alpha
Helix 47
47
B
365 374Right-handed alpha
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There are 2 sheets in PDB entry 3N8U. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
A
379 380anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 376first strand
Strand 2
B
379 380anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il