Analysis of interatomic Contacts of Structural Units in PDB entry:
3N8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N8V entry

There are 2 chains in PDB entry 3N8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 32ASP 584
B
 PRO 32ASP 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 3N8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 38Right-handed 310
Helix 2
2
A
73 82Right-handed alpha
Helix 3
3
A
85 94Right-handed alpha
Helix 4
4
A
99 105Right-handed alpha
Helix 5
5
A
107 122Right-handed alpha
Helix 6
6
A
138 144Right-handed alpha
Helix 7
7
A
173 182Right-handed alpha
Helix 8
8
A
195 205Right-handed alpha
Helix 9
9
A
206 209Right-handed 310
Helix 10
10
A
237 245Right-handed alpha
Helix 11
11
A
295 320Right-handed alpha
Helix 12
12
A
324 347Right-handed alpha
Helix 13
13
A
347 354Right-handed alpha
Helix 14
14
A
362 368Right-handed 310
Helix 15
15
A
378 385Right-handed alpha
Helix 16
16
A
403 408Right-handed alpha
Helix 17
17
A
412 418Right-handed alpha
Helix 18
18
A
418 429Right-handed alpha
Helix 19
19
A
444 459Right-handed alpha
Helix 20
20
A
462 470Right-handed alpha
Helix 21
21
A
477 483Right-handed alpha
Helix 22
22
A
485 496Right-handed alpha
Helix 23
23
A
497 501Right-handed 310
Helix 24
24
A
502 510Right-handed alpha
Helix 25
25
A
519 536Right-handed alpha
Helix 26
26
A
537 541Right-handed 310
Helix 27
27
A
546 551Right-handed 310
Helix 28
28
A
552 561Right-handed alpha
Helix 29
29
A
563 570Right-handed alpha
Helix 30
30
B
34 38Right-handed 310
Helix 31
31
B
73 83Right-handed alpha
Helix 32
32
B
85 94Right-handed alpha
Helix 33
33
B
96 105Right-handed alpha
Helix 34
34
B
107 122Right-handed alpha
Helix 35
35
B
138 144Right-handed alpha
Helix 36
36
B
173 181Right-handed alpha
Helix 37
37
B
195 207Right-handed alpha
Helix 38
38
B
237 245Right-handed alpha
Helix 39
39
B
289 294Right-handed 310
Helix 40
40
B
295 320Right-handed alpha
Helix 41
41
B
324 347Right-handed alpha
Helix 42
42
B
347 354Right-handed alpha
Helix 43
43
B
362 368Right-handed 310
Helix 44
44
B
378 385Right-handed alpha
Helix 45
45
B
387 391Right-handed 310
Helix 46
46
B
403 408Right-handed alpha
Helix 47
47
B
412 429Right-handed alpha
Helix 48
48
B
444 459Right-handed alpha
Helix 49
49
B
462 470Right-handed alpha
Helix 50
50
B
477 483Right-handed alpha
Helix 51
51
B
485 496Right-handed alpha
Helix 52
52
B
497 501Right-handed 310
Helix 53
53
B
502 509Right-handed alpha
Helix 54
54
B
519 536Right-handed alpha
Helix 55
55
B
537 541Right-handed 310
Helix 56
56
B
547 551Right-handed 310
Helix 57
57
B
552 561Right-handed alpha
Helix 58
58
B
563 570Right-handed alpha
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There are 8 sheets in PDB entry 3N8V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
54 58anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
71 72anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 257first strand
Strand 2
A
260 262anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
400 402anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 50first strand
Strand 2
B
54 58anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
71 72anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 257first strand
Strand 2
B
260 262anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 397first strand
Strand 2
B
400 402anti-parallel
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