Analysis of interatomic Contacts of Structural Units in PDB entry:
3NBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NBM entry

There is 1 chain in PDB entry 3NBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 454GLN 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3NBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
466 483Right-handed alpha
Helix 2
2
A
499 503Right-handed 310
Helix 3
3
A
510 514Right-handed 310
Helix 4
4
A
515 524Right-handed alpha
Helix 5
5
A
534 543Right-handed alpha
Helix 6
6
A
544 555Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3NBM.

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 492first strand
Strand 2
A
456 462parallel
Strand 3
A
505 508parallel
Strand 4
A
529 532parallel
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