Analysis of interatomic Contacts of Structural Units in PDB entry:
3NG8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NG8 entry

There are 2 chains in PDB entry 3NG8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 470GLN 556
B
GLU 470GLN 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3NG8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
482 498Right-handed alpha
Helix 2
2
A
500 502Right-handed 310
Helix 3
3
A
526 537Right-handed alpha
Helix 4
4
A
537 546Right-handed alpha
Helix 5
5
B
482 497Right-handed alpha
Helix 6
6
B
500 502Right-handed 310
Helix 7
7
B
526 537Right-handed alpha
Helix 8
8
B
537 546Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3NG8.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
504 510first strand
Strand 2
A
513 518anti-parallel
Strand 3
A
471 476anti-parallel
Strand 4
A
549 555anti-parallel
Strand 5
B
549 555anti-parallel
Strand 6
B
471 476anti-parallel
Strand 7
B
513 518anti-parallel
Strand 8
B
504 510anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il