Analysis of interatomic Contacts of Structural Units in PDB entry:
3NIE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NIE entry

There are 2 chains in PDB entry 3NIE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 14ASN 423
B
ALA 19PHE 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3NIE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
16 20Right-handed 310
Helix 2
2
A
67 83Right-handed alpha
Helix 3
3
A
118 124Right-handed alpha
Helix 4
4
A
129 150Right-handed alpha
Helix 5
5
A
158 160Right-handed 310
Helix 6
6
A
174 178Right-handed 310
Helix 7
7
A
224 229Right-handed alpha
Helix 8
8
A
236 252Right-handed alpha
Helix 9
9
A
260 264Right-handed 310
Helix 10
10
A
286 302Right-handed alpha
Helix 11
11
A
305 310Right-handed alpha
Helix 12
12
A
314 323Right-handed alpha
Helix 13
13
A
331 336Right-handed alpha
Helix 14
14
A
340 351Right-handed alpha
Helix 15
15
A
360 366Right-handed alpha
Helix 16
16
A
367 371Right-handed 310
Helix 17
17
A
375 380Right-handed alpha
Helix 18
18
A
397 413Right-handed alpha
Helix 19
19
A
419 423Right-handed 310
Helix 20
20
B
67 84Right-handed alpha
Helix 21
21
B
118 124Right-handed alpha
Helix 22
22
B
129 150Right-handed alpha
Helix 23
23
B
158 160Right-handed 310
Helix 24
24
B
174 178Right-handed 310
Helix 25
25
B
224 229Right-handed alpha
Helix 26
26
B
236 252Right-handed alpha
Helix 27
27
B
286 302Right-handed alpha
Helix 28
28
B
305 309Right-handed 310
Helix 29
29
B
314 323Right-handed alpha
Helix 30
30
B
331 336Right-handed alpha
Helix 31
31
B
340 351Right-handed alpha
Helix 32
32
B
360 367Right-handed alpha
Helix 33
33
B
368 371Right-handed 310
Helix 34
34
B
375 379Right-handed 310
Helix 35
35
B
397 411Right-handed alpha
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There are 6 sheets in PDB entry 3NIE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
30 38first strand
Strand 2
A
42 49anti-parallel
Strand 3
A
54 61anti-parallel
Strand 4
A
107 112anti-parallel
Strand 5
A
92 95anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
116 117first strand
Strand 2
A
162 164anti-parallel
Strand 3
A
170 172anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
152 153first strand
Strand 2
A
179 180anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
30 38first strand
Strand 2
B
42 49anti-parallel
Strand 3
B
54 61anti-parallel
Strand 4
B
107 112anti-parallel
Strand 5
B
92 95anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
116 117first strand
Strand 2
B
162 164anti-parallel
Strand 3
B
170 172anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
152 153first strand
Strand 2
B
179 180anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il