Analysis of interatomic Contacts of Structural Units in PDB entry:
3NJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NJ8 entry

There are 2 chains in PDB entry 3NJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3PRO 306
B
 PRO 4PRO 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3NJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 34Right-handed alpha
Helix 2
2
A
43 45Right-handed 310
Helix 3
3
A
46 57Right-handed alpha
Helix 4
4
A
85 89Right-handed 310
Helix 5
5
A
90 95Right-handed alpha
Helix 6
6
A
96 100Right-handed 310
Helix 7
7
A
106 118Right-handed alpha
Helix 8
8
A
137 141Right-handed 310
Helix 9
9
A
142 154Right-handed alpha
Helix 10
10
A
154 165Right-handed alpha
Helix 11
11
A
181 183Right-handed 310
Helix 12
12
A
192 215Right-handed alpha
Helix 13
13
A
229 234Right-handed alpha
Helix 14
14
A
242 255Right-handed alpha
Helix 15
15
A
262 274Right-handed alpha
Helix 16
16
A
275 279Right-handed 310
Helix 17
17
A
291 295Right-handed 310
Helix 18
18
B
22 34Right-handed alpha
Helix 19
19
B
43 45Right-handed 310
Helix 20
20
B
46 56Right-handed alpha
Helix 21
21
B
85 89Right-handed 310
Helix 22
22
B
90 96Right-handed alpha
Helix 23
23
B
97 100Right-handed 310
Helix 24
24
B
106 119Right-handed alpha
Helix 25
25
B
142 154Right-handed alpha
Helix 26
26
B
154 165Right-handed alpha
Helix 27
27
B
179 183Right-handed 310
Helix 28
28
B
192 215Right-handed alpha
Helix 29
29
B
229 234Right-handed alpha
Helix 30
30
B
242 255Right-handed alpha
Helix 31
31
B
262 275Right-handed alpha
Helix 32
32
B
276 279Right-handed 310
Helix 33
33
B
291 295Right-handed 310
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There are 2 sheets in PDB entry 3NJ8. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
37 42parallel
Strand 3
A
11 15parallel
Strand 4
A
121 126parallel
Strand 5
A
168 179parallel
Strand 6
A
218 224parallel
Strand 7
A
285 288parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 78first strand
Strand 2
B
37 42parallel
Strand 3
B
11 15parallel
Strand 4
B
121 126parallel
Strand 5
B
168 178parallel
Strand 6
B
218 224parallel
Strand 7
B
285 288parallel
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