Analysis of interatomic Contacts of Structural Units in PDB entry:
3NKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NKV entry

There are 2 chains in PDB entry 3NKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4MET 173
B
 GLU 4MET 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3NKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 31Right-handed alpha
Helix 2
2
A
67 69Right-handed 310
Helix 3
3
A
70 76Right-handed alpha
Helix 4
4
A
92 98Right-handed alpha
Helix 5
5
A
98 110Right-handed alpha
Helix 6
6
A
132 143Right-handed alpha
Helix 7
7
A
157 172Right-handed alpha
Helix 8
8
B
20 31Right-handed alpha
Helix 9
9
B
67 69Right-handed 310
Helix 10
10
B
70 76Right-handed alpha
Helix 11
11
B
92 98Right-handed alpha
Helix 12
12
B
98 110Right-handed alpha
Helix 13
13
B
125 129Right-handed 310
Helix 14
14
B
132 143Right-handed alpha
Helix 15
15
B
157 173Right-handed alpha
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There are 2 sheets in PDB entry 3NKV. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 52first strand
Strand 2
A
55 64anti-parallel
Strand 3
A
7 15parallel
Strand 4
A
83 89parallel
Strand 5
A
115 121parallel
Strand 6
A
147 149parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 52first strand
Strand 2
B
55 64anti-parallel
Strand 3
B
7 15parallel
Strand 4
B
83 89parallel
Strand 5
B
115 121parallel
Strand 6
B
147 150parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il