Analysis of interatomic Contacts of Structural Units in PDB entry:
3NME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NME entry

There are 2 chains in PDB entry 3NME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 90VAL 379
B
 TYR 90GLU 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 3NME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
91 95Right-handed 310
Helix 2
2
A
114 123Right-handed alpha
Helix 3
3
A
133 140Right-handed alpha
Helix 4
4
A
143 153Right-handed alpha
Helix 5
5
A
168 191Right-handed alpha
Helix 6
6
A
203 216Right-handed alpha
Helix 7
7
A
220 232Right-handed alpha
Helix 8
8
A
237 251Right-handed alpha
Helix 9
9
A
347 353Right-handed alpha
Helix 10
10
A
360 375Right-handed alpha
Helix 11
11
B
91 95Right-handed 310
Helix 12
12
B
114 123Right-handed alpha
Helix 13
13
B
133 140Right-handed alpha
Helix 14
14
B
143 153Right-handed alpha
Helix 15
15
B
168 191Right-handed alpha
Helix 16
16
B
203 216Right-handed alpha
Helix 17
17
B
220 232Right-handed alpha
Helix 18
18
B
237 251Right-handed alpha
Helix 19
19
B
343 353Right-handed alpha
Helix 20
20
B
360 374Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3NME. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
105 108anti-parallel
Strand 3
A
193 197parallel
Strand 4
A
125 130parallel
Strand 5
A
158 161parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 262first strand
Strand 2
A
292 299anti-parallel
Strand 3
A
285 286anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 283first strand
Strand 2
A
269 273anti-parallel
Strand 3
A
302 310anti-parallel
Strand 4
A
313 315anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 283first strand
Strand 2
A
269 273anti-parallel
Strand 3
A
302 310anti-parallel
Strand 4
A
332 337anti-parallel
Strand 5
A
322 323anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 102first strand
Strand 2
B
105 108anti-parallel
Strand 3
B
193 197parallel
Strand 4
B
125 130parallel
Strand 5
B
158 161parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 262first strand
Strand 2
B
292 299anti-parallel
Strand 3
B
285 286anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 283first strand
Strand 2
B
269 273anti-parallel
Strand 3
B
302 310anti-parallel
Strand 4
B
314 315anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 283first strand
Strand 2
B
269 273anti-parallel
Strand 3
B
302 310anti-parallel
Strand 4
B
332 337anti-parallel
Strand 5
B
322 323anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il