Analysis of interatomic Contacts of Structural Units in PDB entry:
3NND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NND entry

There are 4 chains in PDB entry 3NND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 14LEU 365
A
 ASP 14GLY 368
C
 ASP 14LEU 365
D
 ASP 14LEU 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 3NND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
27 46Right-handed alpha
Helix 2
2
B
67 81Right-handed alpha
Helix 3
3
B
92 106Right-handed alpha
Helix 4
4
B
135 149Right-handed alpha
Helix 5
5
B
161 175Right-handed alpha
Helix 6
6
B
176 178Right-handed 310
Helix 7
7
B
197 207Right-handed alpha
Helix 8
8
B
225 231Right-handed alpha
Helix 9
9
B
273 288Right-handed alpha
Helix 10
10
B
292 313Right-handed alpha
Helix 11
11
B
316 325Right-handed alpha
Helix 12
12
B
356 365Right-handed alpha
Helix 13
13
A
27 46Right-handed alpha
Helix 14
14
A
67 81Right-handed alpha
Helix 15
15
A
92 105Right-handed alpha
Helix 16
16
A
135 149Right-handed alpha
Helix 17
17
A
161 175Right-handed alpha
Helix 18
18
A
176 178Right-handed 310
Helix 19
19
A
195 207Right-handed alpha
Helix 20
20
A
225 231Right-handed alpha
Helix 21
21
A
273 288Right-handed alpha
Helix 22
22
A
292 313Right-handed alpha
Helix 23
23
A
316 325Right-handed alpha
Helix 24
24
A
356 365Right-handed alpha
Helix 25
25
C
27 46Right-handed alpha
Helix 26
26
C
67 81Right-handed alpha
Helix 27
27
C
92 98Right-handed alpha
Helix 28
28
C
99 105Right-handed alpha
Helix 29
29
C
135 149Right-handed alpha
Helix 30
30
C
162 175Right-handed alpha
Helix 31
31
C
195 207Right-handed alpha
Helix 32
32
C
225 231Right-handed alpha
Helix 33
33
C
232 237Right-handed 310
Helix 34
34
C
273 288Right-handed alpha
Helix 35
35
C
292 313Right-handed alpha
Helix 36
36
C
316 325Right-handed alpha
Helix 37
37
C
356 365Right-handed alpha
Helix 38
38
D
27 46Right-handed alpha
Helix 39
39
D
67 81Right-handed alpha
Helix 40
40
D
92 106Right-handed alpha
Helix 41
41
D
135 149Right-handed alpha
Helix 42
42
D
161 176Right-handed alpha
Helix 43
43
D
197 207Right-handed alpha
Helix 44
44
D
225 232Right-handed alpha
Helix 45
45
D
233 237Right-handed 310
Helix 46
46
D
273 288Right-handed alpha
Helix 47
47
D
292 313Right-handed alpha
Helix 48
48
D
316 325Right-handed alpha
Helix 49
49
D
340 343Right-handed 310
Helix 50
50
D
356 365Right-handed alpha
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There are 16 sheets in PDB entry 3NND. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
55 63anti-parallel
Strand 3
B
15 21parallel
Strand 4
B
86 88parallel
Strand 5
B
109 111parallel
Strand 6
B
129 130parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 188first strand
Strand 2
B
152 159parallel
Strand 3
B
212 217parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 271first strand
Strand 2
A
349 355anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 331first strand
Strand 2
B
334 338anti-parallel
Strand 3
B
345 347anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 355first strand
Strand 2
A
265 271anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
55 63anti-parallel
Strand 3
A
15 21parallel
Strand 4
A
86 88parallel
Strand 5
A
109 112parallel
Strand 6
A
129 131parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 188first strand
Strand 2
A
152 159parallel
Strand 3
A
212 217parallel
Strand 4
A
239 241parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 331first strand
Strand 2
A
334 339anti-parallel
Strand 3
A
344 347anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
55 63anti-parallel
Strand 3
C
15 21parallel
Strand 4
C
86 89parallel
Strand 5
C
110 112parallel
Strand 6
C
129 131parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 188first strand
Strand 2
C
152 159parallel
Strand 3
C
212 217parallel
Strand 4
C
239 241parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
265 271first strand
Strand 2
D
349 355anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
328 331first strand
Strand 2
C
334 338anti-parallel
Strand 3
C
345 347anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
349 355first strand
Strand 2
D
265 271anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 52first strand
Strand 2
D
55 63anti-parallel
Strand 3
D
15 21parallel
Strand 4
D
86 89parallel
Strand 5
D
110 112parallel
Strand 6
D
129 130parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
181 188first strand
Strand 2
D
152 159parallel
Strand 3
D
212 218parallel
Strand 4
D
239 241parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
328 331first strand
Strand 2
D
334 338anti-parallel
Strand 3
D
345 347anti-parallel
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