Analysis of interatomic Contacts of Structural Units in PDB entry:
3NNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NNJ entry

There are 2 chains in PDB entry 3NNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -12ALA 318
B
 GLY -11ALA 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3NNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-10 -5Right-handed 310
Helix 2
2
A
2 17Right-handed alpha
Helix 3
3
A
26 39Right-handed alpha
Helix 4
4
A
67 73Right-handed alpha
Helix 5
5
A
76 82Right-handed alpha
Helix 6
6
A
83 92Right-handed alpha
Helix 7
7
A
158 173Right-handed alpha
Helix 8
8
A
174 175Right-handed 310
Helix 9
9
A
176 180Right-handed 310
Helix 10
10
A
181 189Right-handed alpha
Helix 11
11
A
191 196Right-handed alpha
Helix 12
12
A
197 206Right-handed alpha
Helix 13
13
A
256 275Right-handed alpha
Helix 14
14
A
278 282Right-handed 310
Helix 15
15
A
283 296Right-handed alpha
Helix 16
16
A
301 304Right-handed 310
Helix 17
17
A
305 310Right-handed alpha
Helix 18
18
A
311 316Right-handed alpha
Helix 19
19
B
-11 -4Right-handed 310
Helix 20
20
B
2 17Right-handed alpha
Helix 21
21
B
26 38Right-handed alpha
Helix 22
22
B
73 75Right-handed 310
Helix 23
23
B
76 82Right-handed alpha
Helix 24
24
B
83 92Right-handed alpha
Helix 25
25
B
158 173Right-handed alpha
Helix 26
26
B
174 175Right-handed 310
Helix 27
27
B
176 180Right-handed 310
Helix 28
28
B
181 189Right-handed alpha
Helix 29
29
B
191 196Right-handed alpha
Helix 30
30
B
197 206Right-handed alpha
Helix 31
31
B
256 275Right-handed alpha
Helix 32
32
B
278 282Right-handed 310
Helix 33
33
B
283 295Right-handed alpha
Helix 34
34
B
301 304Right-handed 310
Helix 35
35
B
305 311Right-handed alpha
Helix 36
36
B
311 316Right-handed alpha
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There are 4 sheets in PDB entry 3NNJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
219 223anti-parallel
Strand 3
A
130 136anti-parallel
Strand 4
A
241 250anti-parallel
Strand 5
A
95 105anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
148 151anti-parallel
Strand 3
A
228 230anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 21first strand
Strand 2
B
219 223anti-parallel
Strand 3
B
130 136anti-parallel
Strand 4
B
241 250anti-parallel
Strand 5
B
95 105anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 211first strand
Strand 2
B
148 150anti-parallel
Strand 3
B
228 230anti-parallel
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