Analysis of interatomic Contacts of Structural Units in PDB entry:
3NOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NOO entry

There are 2 chains in PDB entry 3NOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1LEU 228
B
 ALA 2GLY 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3NOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 29Right-handed alpha
Helix 2
2
A
76 81Right-handed alpha
Helix 3
3
A
83 97Right-handed alpha
Helix 4
4
A
105 113Right-handed alpha
Helix 5
5
A
124 135Right-handed 310
Helix 6
6
A
156 170Right-handed alpha
Helix 7
7
A
171 183Right-handed alpha
Helix 8
8
A
199 228Right-handed alpha
Helix 9
9
B
14 26Right-handed alpha
Helix 10
10
B
73 78Right-handed alpha
Helix 11
11
B
80 92Right-handed alpha
Helix 12
12
B
102 110Right-handed alpha
Helix 13
13
B
121 132Right-handed 310
Helix 14
14
B
153 167Right-handed alpha
Helix 15
15
B
168 180Right-handed alpha
Helix 16
16
B
196 228Right-handed alpha
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There are 6 sheets in PDB entry 3NOO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
34 40parallel
Strand 3
A
6 11parallel
Strand 4
A
68 71parallel
Strand 5
A
99 103parallel
Strand 6
A
149 152parallel
Strand 7
A
143 146anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
53 56anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
137 138parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
31 37parallel
Strand 3
B
3 8parallel
Strand 4
B
65 68parallel
Strand 5
B
96 100parallel
Strand 6
B
146 149parallel
Strand 7
B
140 143anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
50 53anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
134 135parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il