Analysis of interatomic Contacts of Structural Units in PDB entry:
3NR8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NR8 entry

There are 2 chains in PDB entry 3NR8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
GLU 420SER 731
A
ASP 422SER 731
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3NR8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
B
442 447Right-handed alpha
Helix 2
2
B
477 494Right-handed alpha
Helix 3
3
B
516 520Right-handed 310
Helix 4
4
B
568 583Right-handed alpha
Helix 5
5
B
615 625Right-handed alpha
Helix 6
6
B
628 633Right-handed alpha
Helix 7
7
B
635 643Right-handed alpha
Helix 8
8
A
442 447Right-handed alpha
Helix 9
9
A
477 494Right-handed alpha
Helix 10
10
A
516 520Right-handed 310
Helix 11
11
A
568 583Right-handed alpha
Helix 12
12
A
594 598Right-handed 310
Helix 13
13
A
615 625Right-handed alpha
Helix 14
14
A
628 633Right-handed alpha
Helix 15
15
A
635 643Right-handed alpha
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There are 4 sheets in PDB entry 3NR8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
451 453first strand
Strand 2
B
702 709anti-parallel
Strand 3
B
721 728anti-parallel
Strand 4
B
423 431anti-parallel
Strand 5
B
466 471parallel
Strand 6
B
508 514anti-parallel
Strand 7
B
498 505anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
522 531first strand
Strand 2
B
542 550anti-parallel
Strand 3
B
553 561anti-parallel
Strand 4
B
601 607parallel
Strand 5
B
690 695anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
451 453first strand
Strand 2
A
702 709anti-parallel
Strand 3
A
721 728anti-parallel
Strand 4
A
423 431anti-parallel
Strand 5
A
466 471parallel
Strand 6
A
508 514anti-parallel
Strand 7
A
498 505anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
522 530first strand
Strand 2
A
543 550anti-parallel
Strand 3
A
553 561anti-parallel
Strand 4
A
601 607parallel
Strand 5
A
690 695anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il