Analysis of interatomic Contacts of Structural Units in PDB entry:
3NTB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3NTB entry

There are 3 chains in PDB entry 3NTB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 33	GLN 583
B	ALA 33	VAL 582
C	ALA 33	MET 163

There are129 helices in PDB entry 3NTB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	73	83	Right-handed alpha
Helix 2	2	A	85	95	Right-handed alpha
Helix 3	3	A	96	104	Right-handed alpha
Helix 4	4	A	105	122	Right-handed alpha
Helix 5	5	A	138	144	Right-handed alpha
Helix 6	6	A	173	182	Right-handed alpha
Helix 7	7	A	195	207	Right-handed alpha
Helix 8	8	A	230	235	Right-handed alpha
Helix 9	9	A	237	245	Right-handed alpha
Helix 10	10	A	265	270	Right-handed alpha
Helix 11	11	A	280	284	Right-handed 310
Helix 12	12	A	295	320	Right-handed alpha
Helix 13	13	A	324	347	Right-handed alpha
Helix 14	14	A	347	354	Right-handed alpha
Helix 15	15	A	362	367	Right-handed 310
Helix 16	16	A	378	385	Right-handed alpha
Helix 17	17	A	387	391	Right-handed 310
Helix 18	18	A	403	408	Right-handed alpha
Helix 19	19	A	411	429	Right-handed alpha
Helix 20	20	A	441	443	Right-handed 310
Helix 21	21	A	444	458	Right-handed alpha
Helix 22	22	A	462	470	Right-handed alpha
Helix 23	23	A	477	483	Right-handed alpha
Helix 24	24	A	485	496	Right-handed alpha
Helix 25	25	A	497	501	Right-handed 310
Helix 26	26	A	502	510	Right-handed alpha
Helix 27	27	A	519	536	Right-handed alpha
Helix 28	28	A	537	541	Right-handed 310
Helix 29	29	A	546	551	Right-handed 310
Helix 30	30	A	552	561	Right-handed alpha
Helix 31	31	A	563	572	Right-handed alpha
Helix 32	32	B	73	83	Right-handed alpha
Helix 33	33	B	85	94	Right-handed alpha
Helix 34	34	B	96	104	Right-handed alpha
Helix 35	35	B	105	122	Right-handed alpha
Helix 36	36	B	138	144	Right-handed alpha
Helix 37	37	B	173	182	Right-handed alpha
Helix 38	38	B	195	207	Right-handed alpha
Helix 39	39	B	230	235	Right-handed alpha
Helix 40	40	B	237	245	Right-handed alpha
Helix 41	41	B	265	270	Right-handed alpha
Helix 42	42	B	280	284	Right-handed 310
Helix 43	43	B	295	320	Right-handed alpha
Helix 44	44	B	324	347	Right-handed alpha
Helix 45	45	B	347	354	Right-handed alpha
Helix 46	46	B	362	367	Right-handed 310
Helix 47	47	B	378	385	Right-handed alpha
Helix 48	48	B	386	391	Right-handed 310
Helix 49	49	B	403	408	Right-handed alpha
Helix 50	50	B	411	418	Right-handed alpha
Helix 51	51	B	418	429	Right-handed alpha
Helix 52	52	B	441	443	Right-handed 310
Helix 53	53	B	444	458	Right-handed alpha
Helix 54	54	B	462	470	Right-handed alpha
Helix 55	55	B	477	483	Right-handed alpha
Helix 56	56	B	485	496	Right-handed alpha
Helix 57	57	B	497	501	Right-handed 310
Helix 58	58	B	502	510	Right-handed alpha
Helix 59	59	B	519	536	Right-handed alpha
Helix 60	60	B	537	541	Right-handed 310
Helix 61	61	B	546	551	Right-handed 310
Helix 62	62	B	552	561	Right-handed alpha
Helix 63	63	B	563	572	Right-handed alpha
Helix 64	64	C	73	83	Right-handed alpha
Helix 65	65	C	85	94	Right-handed alpha
Helix 66	66	C	96	105	Right-handed alpha
Helix 67	67	C	105	122	Right-handed alpha
Helix 68	68	C	138	144	Right-handed alpha
Helix 69	69	C	173	182	Right-handed alpha
Helix 70	70	C	195	207	Right-handed alpha
Helix 71	71	C	230	235	Right-handed alpha
Helix 72	72	C	237	245	Right-handed alpha
Helix 73	73	C	265	270	Right-handed alpha
Helix 74	74	C	280	284	Right-handed 310
Helix 75	75	C	291	294	Right-handed 310
Helix 76	76	C	295	320	Right-handed alpha
Helix 77	77	C	324	347	Right-handed alpha
Helix 78	78	C	347	354	Right-handed alpha
Helix 79	79	C	362	367	Right-handed 310
Helix 80	80	C	378	385	Right-handed alpha
Helix 81	81	C	386	391	Right-handed 310
Helix 82	82	C	403	408	Right-handed alpha
Helix 83	83	C	411	418	Right-handed alpha
Helix 84	84	C	418	429	Right-handed alpha
Helix 85	85	C	441	443	Right-handed 310
Helix 86	86	C	444	458	Right-handed alpha
Helix 87	87	C	462	470	Right-handed alpha
Helix 88	88	C	477	483	Right-handed alpha
Helix 89	89	C	485	496	Right-handed alpha
Helix 90	90	C	497	501	Right-handed 310
Helix 91	91	C	502	510	Right-handed alpha
Helix 92	92	C	519	536	Right-handed alpha
Helix 93	93	C	537	541	Right-handed 310
Helix 94	94	C	546	551	Right-handed 310
Helix 95	95	C	552	561	Right-handed alpha
Helix 96	96	C	563	572	Right-handed alpha
Helix 97	97	D	34	39	Right-handed 310
Helix 98	98	D	73	83	Right-handed alpha
Helix 99	99	D	85	95	Right-handed alpha
Helix 100	100	D	96	105	Right-handed alpha
Helix 101	101	D	105	122	Right-handed alpha
Helix 102	102	D	138	144	Right-handed alpha
Helix 103	103	D	173	182	Right-handed alpha
Helix 104	104	D	195	207	Right-handed alpha
Helix 105	105	D	230	235	Right-handed alpha
Helix 106	106	D	237	245	Right-handed alpha
Helix 107	107	D	265	270	Right-handed alpha
Helix 108	108	D	280	284	Right-handed 310
Helix 109	109	D	295	320	Right-handed alpha
Helix 110	110	D	324	347	Right-handed alpha
Helix 111	111	D	347	354	Right-handed alpha
Helix 112	112	D	362	367	Right-handed 310
Helix 113	113	D	378	385	Right-handed alpha
Helix 114	114	D	387	391	Right-handed 310
Helix 115	115	D	403	408	Right-handed alpha
Helix 116	116	D	411	418	Right-handed alpha
Helix 117	117	D	418	429	Right-handed alpha
Helix 118	118	D	441	443	Right-handed 310
Helix 119	119	D	444	458	Right-handed alpha
Helix 120	120	D	462	470	Right-handed alpha
Helix 121	121	D	477	483	Right-handed alpha
Helix 122	122	D	485	496	Right-handed alpha
Helix 123	123	D	497	501	Right-handed 310
Helix 124	124	D	502	510	Right-handed alpha
Helix 125	125	D	519	536	Right-handed alpha
Helix 126	126	D	537	541	Right-handed 310
Helix 127	127	D	546	551	Right-handed 310
Helix 128	128	D	552	561	Right-handed alpha
Helix 129	129	D	563	572	Right-handed alpha

There are 19 sheets in PDB entry 3NTB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	55	58	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	71	72	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	149	150	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	261	262	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	400	402	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	49	first strand
Strand 2	B	55	58	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	71	72	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	149	150	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	260	262	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	397	first strand
Strand 2	B	400	402	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	49	first strand
Strand 2	C	55	58	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	71	72	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	149	150	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	262	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	397	first strand
Strand 2	C	400	402	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	49	first strand
Strand 2	D	55	58	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	71	72	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	257	first strand
Strand 2	D	260	262	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	397	first strand
Strand 2	D	400	402	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3NTB

Analysis of interatomic Contacts of Structural Units in PDB entry:
3NTB