Analysis of interatomic Contacts of Structural Units in PDB entry:
3NVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NVA entry

There are 2 chains in PDB entry 3NVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2SER 534
B
 PRO 2SER 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 3NVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 32Right-handed alpha
Helix 2
2
A
53 58Right-handed alpha
Helix 3
3
A
71 81Right-handed alpha
Helix 4
4
A
85 87Right-handed 310
Helix 5
5
A
92 105Right-handed alpha
Helix 6
6
A
114 135Right-handed alpha
Helix 7
7
A
149 151Right-handed 310
Helix 8
8
A
152 167Right-handed alpha
Helix 9
9
A
190 204Right-handed alpha
Helix 10
10
A
219 230Right-handed alpha
Helix 11
11
A
233 235Right-handed 310
Helix 12
12
A
245 247Right-handed 310
Helix 13
13
A
248 257Right-handed alpha
Helix 14
14
A
257 266Right-handed alpha
Helix 15
15
A
275 287Right-handed alpha
Helix 16
16
A
305 308Right-handed 310
Helix 17
17
A
309 323Right-handed alpha
Helix 18
18
A
335 338Right-handed 310
Helix 19
19
A
364 379Right-handed alpha
Helix 20
20
A
386 399Right-handed alpha
Helix 21
21
A
449 456Right-handed alpha
Helix 22
22
A
471 481Right-handed alpha
Helix 23
23
A
511 516Right-handed 310
Helix 24
24
A
522 533Right-handed alpha
Helix 25
25
B
17 31Right-handed alpha
Helix 26
26
B
71 81Right-handed alpha
Helix 27
27
B
85 87Right-handed 310
Helix 28
28
B
92 105Right-handed alpha
Helix 29
29
B
117 134Right-handed alpha
Helix 30
30
B
149 151Right-handed 310
Helix 31
31
B
152 167Right-handed alpha
Helix 32
32
B
189 204Right-handed alpha
Helix 33
33
B
219 231Right-handed alpha
Helix 34
34
B
233 235Right-handed 310
Helix 35
35
B
245 247Right-handed 310
Helix 36
36
B
248 256Right-handed alpha
Helix 37
37
B
257 266Right-handed alpha
Helix 38
38
B
275 286Right-handed alpha
Helix 39
39
B
309 323Right-handed alpha
Helix 40
40
B
335 338Right-handed 310
Helix 41
41
B
364 378Right-handed alpha
Helix 42
42
B
386 400Right-handed alpha
Helix 43
43
B
449 456Right-handed alpha
Helix 44
44
B
474 481Right-handed alpha
Helix 45
45
B
511 516Right-handed 310
Helix 46
46
B
522 533Right-handed alpha
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There are 8 sheets in PDB entry 3NVA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
36 42parallel
Strand 3
A
138 143parallel
Strand 4
A
4 9parallel
Strand 5
A
171 178parallel
Strand 6
A
209 214parallel
Strand 7
A
237 241parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
68 69anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 333first strand
Strand 2
A
293 300parallel
Strand 3
A
353 356parallel
Strand 4
A
382 385parallel
Strand 5
A
505 508parallel
Strand 6
A
494 498anti-parallel
Strand 7
A
484 488anti-parallel
Strand 8
A
437 445anti-parallel
Strand 9
A
459 466anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 408first strand
Strand 2
A
418 421parallel
Strand 3
A
469 470anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 91first strand
Strand 2
B
36 42parallel
Strand 3
B
138 143parallel
Strand 4
B
4 10parallel
Strand 5
B
171 178parallel
Strand 6
B
209 214parallel
Strand 7
B
237 241parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
68 70anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 333first strand
Strand 2
B
293 300parallel
Strand 3
B
354 356parallel
Strand 4
B
382 385parallel
Strand 5
B
505 508parallel
Strand 6
B
494 498anti-parallel
Strand 7
B
484 489anti-parallel
Strand 8
B
437 445anti-parallel
Strand 9
B
459 466anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
406 408first strand
Strand 2
B
417 421parallel
Strand 3
B
469 470anti-parallel
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