Analysis of interatomic Contacts of Structural Units in PDB entry:
3NVV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3NVV entry

There are 6 chains in PDB entry 3NVV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	LYS 165
B	LEU 195	GLY 528
C	ASP 571	CYS 1325
J	THR 2	LYS 165
K	PRO 224	GLY 528
L	ASP 571	THR 1315

There are 99 helices in PDB entry 3NVV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	25	33	Right-handed alpha
Helix 2	2	A	76	80	Right-handed 310
Helix 3	3	A	87	91	Right-handed 310
Helix 4	4	A	99	108	Right-handed alpha
Helix 5	5	A	116	131	Right-handed alpha
Helix 6	6	A	135	142	Right-handed alpha
Helix 7	7	A	153	162	Right-handed alpha
Helix 8	8	B	197	201	Right-handed 310
Helix 9	9	B	205	209	Right-handed 310
Helix 10	10	B	213	220	Right-handed alpha
Helix 11	11	B	241	252	Right-handed alpha
Helix 12	12	B	263	271	Right-handed alpha
Helix 13	13	B	284	288	Right-handed 310
Helix 14	14	B	304	319	Right-handed alpha
Helix 15	15	B	320	323	Right-handed 310
Helix 16	16	B	324	335	Right-handed alpha
Helix 17	17	B	339	344	Right-handed alpha
Helix 18	18	B	347	355	Right-handed alpha
Helix 19	19	B	361	368	Right-handed alpha
Helix 20	20	B	386	390	Right-handed 310
Helix 21	21	B	466	472	Right-handed alpha
Helix 22	22	B	479	494	Right-handed alpha
Helix 23	23	B	504	528	Right-handed alpha
Helix 24	24	C	581	587	Right-handed alpha
Helix 25	25	C	592	596	Right-handed 310
Helix 26	26	C	624	628	Right-handed 310
Helix 27	27	C	636	640	Right-handed 310
Helix 28	28	C	674	684	Right-handed alpha
Helix 29	29	C	697	704	Right-handed alpha
Helix 30	30	C	718	726	Right-handed alpha
Helix 31	31	C	768	781	Right-handed alpha
Helix 32	32	C	783	785	Right-handed 310
Helix 33	33	C	805	820	Right-handed alpha
Helix 34	34	C	828	836	Right-handed alpha
Helix 35	35	C	873	885	Right-handed alpha
Helix 36	36	C	915	935	Right-handed alpha
Helix 37	37	C	937	946	Right-handed alpha
Helix 38	38	C	963	975	Right-handed alpha
Helix 39	39	C	976	991	Right-handed alpha
Helix 40	40	C	1011	1014	Right-handed 310
Helix 41	41	C	1041	1055	Right-handed alpha
Helix 42	42	C	1057	1059	Right-handed 310
Helix 43	43	C	1081	1108	Right-handed alpha
Helix 44	44	C	1112	1123	Right-handed alpha
Helix 45	45	C	1187	1208	Right-handed alpha
Helix 46	46	C	1231	1235	Right-handed 310
Helix 47	47	C	1252	1256	Right-handed 310
Helix 48	48	C	1263	1266	Right-handed 310
Helix 49	49	C	1267	1286	Right-handed alpha
Helix 50	50	C	1301	1309	Right-handed alpha
Helix 51	51	C	1316	1320	Right-handed 310
Helix 52	52	J	25	33	Right-handed alpha
Helix 53	53	J	76	80	Right-handed 310
Helix 54	54	J	87	91	Right-handed 310
Helix 55	55	J	99	108	Right-handed alpha
Helix 56	56	J	116	131	Right-handed alpha
Helix 57	57	J	135	142	Right-handed alpha
Helix 58	58	J	153	161	Right-handed alpha
Helix 59	59	J	162	164	Right-handed 310
Helix 60	60	K	241	252	Right-handed alpha
Helix 61	61	K	263	271	Right-handed alpha
Helix 62	62	K	284	288	Right-handed 310
Helix 63	63	K	304	319	Right-handed alpha
Helix 64	64	K	320	323	Right-handed 310
Helix 65	65	K	324	335	Right-handed alpha
Helix 66	66	K	339	346	Right-handed alpha
Helix 67	67	K	347	355	Right-handed alpha
Helix 68	68	K	361	369	Right-handed alpha
Helix 69	69	K	386	390	Right-handed 310
Helix 70	70	K	466	472	Right-handed alpha
Helix 71	71	K	479	494	Right-handed alpha
Helix 72	72	K	504	528	Right-handed alpha
Helix 73	73	L	581	587	Right-handed alpha
Helix 74	74	L	592	596	Right-handed 310
Helix 75	75	L	624	628	Right-handed 310
Helix 76	76	L	636	640	Right-handed 310
Helix 77	77	L	674	684	Right-handed alpha
Helix 78	78	L	697	704	Right-handed alpha
Helix 79	79	L	718	726	Right-handed alpha
Helix 80	80	L	768	781	Right-handed alpha
Helix 81	81	L	783	785	Right-handed 310
Helix 82	82	L	805	820	Right-handed alpha
Helix 83	83	L	828	836	Right-handed alpha
Helix 84	84	L	873	884	Right-handed alpha
Helix 85	85	L	915	935	Right-handed alpha
Helix 86	86	L	937	946	Right-handed alpha
Helix 87	87	L	963	976	Right-handed alpha
Helix 88	88	L	976	991	Right-handed alpha
Helix 89	89	L	1011	1014	Right-handed 310
Helix 90	90	L	1041	1055	Right-handed alpha
Helix 91	91	L	1057	1059	Right-handed 310
Helix 92	92	L	1081	1108	Right-handed alpha
Helix 93	93	L	1112	1123	Right-handed alpha
Helix 94	94	L	1187	1208	Right-handed alpha
Helix 95	95	L	1231	1235	Right-handed 310
Helix 96	96	L	1252	1256	Right-handed 310
Helix 97	97	L	1263	1266	Right-handed 310
Helix 98	98	L	1267	1286	Right-handed alpha
Helix 99	99	L	1301	1309	Right-handed alpha

There are 20 sheets in PDB entry 3NVV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	17	first strand
Strand 2	A	6	10	anti-parallel
Strand 3	A	84	86	parallel
Strand 4	A	52	59	anti-parallel
Strand 5	A	64	71	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	B	235	238	anti-parallel
Strand 3	B	277	280	parallel
Strand 4	B	256	257	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	296	300	anti-parallel
Strand 3	B	403	410	anti-parallel
Strand 4	B	371	375	anti-parallel
Strand 5	B	380	384	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	422	first strand
Strand 2	B	435	442	anti-parallel
Strand 3	B	449	457	anti-parallel
Strand 4	B	464	465	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	631	635	first strand
Strand 2	C	666	672	anti-parallel
Strand 3	C	603	609	anti-parallel
Strand 4	C	823	826	parallel
Strand 5	C	748	753	anti-parallel
Strand 6	C	760	764	anti-parallel
Strand 7	C	787	791	parallel
Strand 8	C	1066	1067	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	659	660	first strand
Strand 2	C	615	621	anti-parallel
Strand 3	C	686	691	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	645	646	first strand
Strand 2	C	652	653	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	716	first strand
Strand 2	C	894	902	anti-parallel
Strand 3	C	856	868	parallel
Strand 4	C	842	850	anti-parallel
Strand 5	C	728	736	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	994	1007	first strand
Strand 2	C	1152	1165	anti-parallel
Strand 3	C	1171	1181	anti-parallel
Strand 4	C	1238	1243	parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1061	1062	first strand
Strand 2	C	1029	1033	parallel
Strand 3	C	1016	1023	anti-parallel
Strand 4	C	1128	1134	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	13	17	first strand
Strand 2	J	6	10	anti-parallel
Strand 3	J	84	86	parallel
Strand 4	J	52	59	anti-parallel
Strand 5	J	64	71	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	227	230	first strand
Strand 2	K	235	238	anti-parallel
Strand 3	K	277	280	parallel
Strand 4	K	256	257	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	290	292	first strand
Strand 2	K	296	300	anti-parallel
Strand 3	K	403	410	anti-parallel
Strand 4	K	371	375	anti-parallel
Strand 5	K	380	384	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	416	422	first strand
Strand 2	K	435	442	anti-parallel
Strand 3	K	449	457	anti-parallel
Strand 4	K	464	465	anti-parallel

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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	631	635	first strand
Strand 2	L	666	672	anti-parallel
Strand 3	L	603	609	anti-parallel
Strand 4	L	823	826	parallel
Strand 5	L	748	753	anti-parallel
Strand 6	L	760	764	anti-parallel
Strand 7	L	787	791	parallel
Strand 8	L	1066	1067	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	659	660	first strand
Strand 2	L	615	621	anti-parallel
Strand 3	L	686	691	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	645	646	first strand
Strand 2	L	652	653	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	707	716	first strand
Strand 2	L	894	902	anti-parallel
Strand 3	L	856	868	parallel
Strand 4	L	842	850	anti-parallel
Strand 5	L	728	736	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	994	1007	first strand
Strand 2	L	1152	1165	anti-parallel
Strand 3	L	1171	1181	anti-parallel
Strand 4	L	1238	1243	parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1061	1062	first strand
Strand 2	L	1029	1033	parallel
Strand 3	L	1016	1023	anti-parallel
Strand 4	L	1128	1134	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3NVV

Analysis of interatomic Contacts of Structural Units in PDB entry:
3NVV