Analysis of interatomic Contacts of Structural Units in PDB entry:
3NZG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3NZG entry

There are 4 chains in PDB entry 3NZG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	LEU 386
B	LEU 5	LEU 386
C	LEU 5	LEU 386
D	SER 2	LEU 386

There are 63 helices in PDB entry 3NZG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	51	60	Right-handed alpha
Helix 2	2	A	82	94	Right-handed alpha
Helix 3	3	A	94	99	Right-handed alpha
Helix 4	4	A	101	123	Right-handed alpha
Helix 5	5	A	125	131	Right-handed 310
Helix 6	6	A	153	171	Right-handed alpha
Helix 7	7	A	187	203	Right-handed alpha
Helix 8	8	A	218	229	Right-handed alpha
Helix 9	9	A	230	233	Right-handed 310
Helix 10	10	A	245	256	Right-handed alpha
Helix 11	11	A	267	278	Right-handed alpha
Helix 12	12	A	292	307	Right-handed alpha
Helix 13	13	A	318	332	Right-handed alpha
Helix 14	14	A	348	354	Right-handed alpha
Helix 15	15	A	379	385	Right-handed alpha
Helix 16	16	B	51	60	Right-handed alpha
Helix 17	17	B	82	94	Right-handed alpha
Helix 18	18	B	94	99	Right-handed alpha
Helix 19	19	B	101	123	Right-handed alpha
Helix 20	20	B	125	130	Right-handed 310
Helix 21	21	B	153	171	Right-handed alpha
Helix 22	22	B	187	203	Right-handed alpha
Helix 23	23	B	218	229	Right-handed alpha
Helix 24	24	B	230	233	Right-handed 310
Helix 25	25	B	245	256	Right-handed alpha
Helix 26	26	B	267	278	Right-handed alpha
Helix 27	27	B	292	307	Right-handed alpha
Helix 28	28	B	318	332	Right-handed alpha
Helix 29	29	B	342	346	Right-handed 310
Helix 30	30	B	348	354	Right-handed alpha
Helix 31	31	B	379	385	Right-handed alpha
Helix 32	32	C	51	60	Right-handed alpha
Helix 33	33	C	82	94	Right-handed alpha
Helix 34	34	C	94	99	Right-handed alpha
Helix 35	35	C	101	123	Right-handed alpha
Helix 36	36	C	125	129	Right-handed 310
Helix 37	37	C	153	171	Right-handed alpha
Helix 38	38	C	187	203	Right-handed alpha
Helix 39	39	C	218	229	Right-handed alpha
Helix 40	40	C	230	233	Right-handed 310
Helix 41	41	C	245	256	Right-handed alpha
Helix 42	42	C	267	278	Right-handed alpha
Helix 43	43	C	292	307	Right-handed alpha
Helix 44	44	C	318	332	Right-handed alpha
Helix 45	45	C	342	346	Right-handed 310
Helix 46	46	C	348	354	Right-handed alpha
Helix 47	47	C	379	384	Right-handed alpha
Helix 48	48	D	51	59	Right-handed alpha
Helix 49	49	D	82	94	Right-handed alpha
Helix 50	50	D	94	99	Right-handed alpha
Helix 51	51	D	101	123	Right-handed alpha
Helix 52	52	D	125	130	Right-handed 310
Helix 53	53	D	153	171	Right-handed alpha
Helix 54	54	D	187	203	Right-handed alpha
Helix 55	55	D	218	229	Right-handed alpha
Helix 56	56	D	230	233	Right-handed 310
Helix 57	57	D	245	256	Right-handed alpha
Helix 58	58	D	267	278	Right-handed alpha
Helix 59	59	D	292	307	Right-handed alpha
Helix 60	60	D	318	332	Right-handed alpha
Helix 61	61	D	342	346	Right-handed 310
Helix 62	62	D	348	354	Right-handed alpha
Helix 63	63	D	379	385	Right-handed alpha

There are 20 sheets in PDB entry 3NZG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	22	first strand
Strand 2	A	29	38	anti-parallel
Strand 3	A	43	48	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	A	366	367	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	207	211	parallel
Strand 3	A	175	179	parallel
Strand 4	A	141	143	parallel
Strand 5	A	339	340	parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	262	first strand
Strand 2	A	283	284	parallel
Strand 3	A	310	311	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	356	first strand
Strand 2	A	377	378	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	22	first strand
Strand 2	B	29	38	anti-parallel
Strand 3	B	43	48	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	138	first strand
Strand 2	B	366	367	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	238	first strand
Strand 2	B	207	211	parallel
Strand 3	B	175	179	parallel
Strand 4	B	141	143	parallel
Strand 5	B	339	340	parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	262	first strand
Strand 2	B	283	284	parallel
Strand 3	B	310	311	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	356	first strand
Strand 2	B	377	378	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	22	first strand
Strand 2	C	29	38	anti-parallel
Strand 3	C	43	48	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	366	367	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	238	first strand
Strand 2	C	207	211	parallel
Strand 3	C	175	179	parallel
Strand 4	C	141	143	parallel
Strand 5	C	339	340	parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	262	first strand
Strand 2	C	283	284	parallel
Strand 3	C	310	311	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	356	first strand
Strand 2	C	377	378	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	22	first strand
Strand 2	D	29	38	anti-parallel
Strand 3	D	43	48	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	138	first strand
Strand 2	D	366	367	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	238	first strand
Strand 2	D	207	211	parallel
Strand 3	D	175	179	parallel
Strand 4	D	141	143	parallel
Strand 5	D	339	340	parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	262	first strand
Strand 2	D	283	284	parallel
Strand 3	D	310	311	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	355	356	first strand
Strand 2	D	377	378	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3NZG

Analysis of interatomic Contacts of Structural Units in PDB entry:
3NZG