Analysis of interatomic Contacts of Structural Units in PDB entry:
3O0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O0D entry

There are 7 chains in PDB entry 3O0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ILE 301
B
 VAL 1ILE 301
C
 VAL 1ILE 301
D
 VAL 1ILE 301
E
 VAL 1ILE 301
F
 VAL 1ILE 301
G
 VAL 1GLY 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 86 helices in PDB entry 3O0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 28Right-handed alpha
Helix 2
2
A
29 31Right-handed 310
Helix 3
3
A
46 50Right-handed 310
Helix 4
4
A
90 101Right-handed alpha
Helix 5
5
A
109 111Right-handed 310
Helix 6
6
A
127 151Right-handed alpha
Helix 7
7
A
162 178Right-handed alpha
Helix 8
8
A
194 207Right-handed alpha
Helix 9
9
A
231 235Right-handed 310
Helix 10
10
A
258 260Right-handed 310
Helix 11
11
A
273 277Right-handed 310
Helix 12
12
A
284 291Right-handed alpha
Helix 13
13
B
11 28Right-handed alpha
Helix 14
14
B
29 31Right-handed 310
Helix 15
15
B
46 50Right-handed 310
Helix 16
16
B
90 101Right-handed alpha
Helix 17
17
B
109 111Right-handed 310
Helix 18
18
B
127 151Right-handed alpha
Helix 19
19
B
162 178Right-handed alpha
Helix 20
20
B
194 207Right-handed alpha
Helix 21
21
B
231 235Right-handed 310
Helix 22
22
B
258 260Right-handed 310
Helix 23
23
B
273 277Right-handed 310
Helix 24
24
B
284 291Right-handed alpha
Helix 25
25
C
11 28Right-handed alpha
Helix 26
26
C
29 31Right-handed 310
Helix 27
27
C
46 50Right-handed 310
Helix 28
28
C
90 101Right-handed alpha
Helix 29
29
C
109 111Right-handed 310
Helix 30
30
C
127 151Right-handed alpha
Helix 31
31
C
162 178Right-handed alpha
Helix 32
32
C
194 207Right-handed alpha
Helix 33
33
C
231 235Right-handed 310
Helix 34
34
C
258 260Right-handed 310
Helix 35
35
C
273 277Right-handed 310
Helix 36
36
C
284 291Right-handed alpha
Helix 37
37
D
11 28Right-handed alpha
Helix 38
38
D
29 31Right-handed 310
Helix 39
39
D
46 50Right-handed 310
Helix 40
40
D
90 100Right-handed alpha
Helix 41
41
D
109 111Right-handed 310
Helix 42
42
D
126 151Right-handed alpha
Helix 43
43
D
162 178Right-handed alpha
Helix 44
44
D
195 207Right-handed alpha
Helix 45
45
D
231 235Right-handed 310
Helix 46
46
D
258 260Right-handed 310
Helix 47
47
D
273 277Right-handed 310
Helix 48
48
D
284 291Right-handed alpha
Helix 49
49
E
11 28Right-handed alpha
Helix 50
50
E
29 31Right-handed 310
Helix 51
51
E
46 50Right-handed 310
Helix 52
52
E
90 101Right-handed alpha
Helix 53
53
E
109 111Right-handed 310
Helix 54
54
E
127 151Right-handed alpha
Helix 55
55
E
162 178Right-handed alpha
Helix 56
56
E
195 207Right-handed alpha
Helix 57
57
E
231 235Right-handed 310
Helix 58
58
E
258 260Right-handed 310
Helix 59
59
E
273 277Right-handed 310
Helix 60
60
E
284 291Right-handed alpha
Helix 61
61
F
11 28Right-handed alpha
Helix 62
62
F
29 31Right-handed 310
Helix 63
63
F
46 50Right-handed 310
Helix 64
64
F
90 99Right-handed alpha
Helix 65
65
F
109 111Right-handed 310
Helix 66
66
F
127 151Right-handed alpha
Helix 67
67
F
162 178Right-handed alpha
Helix 68
68
F
194 207Right-handed alpha
Helix 69
69
F
231 235Right-handed 310
Helix 70
70
F
258 260Right-handed 310
Helix 71
71
F
273 277Right-handed 310
Helix 72
72
F
278 283Right-handed alpha
Helix 73
73
F
284 291Right-handed alpha
Helix 74
74
G
11 28Right-handed alpha
Helix 75
75
G
29 31Right-handed 310
Helix 76
76
G
46 50Right-handed 310
Helix 77
77
G
90 95Right-handed alpha
Helix 78
78
G
97 101Right-handed 310
Helix 79
79
G
109 111Right-handed 310
Helix 80
80
G
127 151Right-handed alpha
Helix 81
81
G
162 178Right-handed alpha
Helix 82
82
G
194 207Right-handed alpha
Helix 83
83
G
231 235Right-handed 310
Helix 84
84
G
258 260Right-handed 310
Helix 85
85
G
273 277Right-handed 310
Helix 86
86
G
284 291Right-handed alpha
Back to top of page

There are 23 sheets in PDB entry 3O0D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
269 270parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
262 265anti-parallel
Strand 3
A
247 250anti-parallel
Strand 4
A
222 227parallel
Strand 5
A
183 187parallel
Strand 6
A
155 161parallel
Strand 7
A
80 87parallel
Strand 8
A
68 75anti-parallel
Strand 9
A
53 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
269 270parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
262 265anti-parallel
Strand 3
B
247 250anti-parallel
Strand 4
B
222 227parallel
Strand 5
B
183 187parallel
Strand 6
B
155 161parallel
Strand 7
B
80 87parallel
Strand 8
B
68 75anti-parallel
Strand 9
B
53 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 107first strand
Strand 2
B
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 4first strand
Strand 2
C
269 270parallel
Back to list of sheets
Back to top of page

There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 9first strand
Strand 2
C
262 265anti-parallel
Strand 3
C
247 250anti-parallel
Strand 4
C
222 227parallel
Strand 5
C
183 187parallel
Strand 6
C
155 161parallel
Strand 7
C
80 87parallel
Strand 8
C
68 75anti-parallel
Strand 9
C
53 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 107first strand
Strand 2
C
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 4first strand
Strand 2
D
269 270parallel
Back to list of sheets
Back to top of page

There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 9first strand
Strand 2
D
262 265anti-parallel
Strand 3
D
247 250anti-parallel
Strand 4
D
222 227parallel
Strand 5
D
183 187parallel
Strand 6
D
155 161parallel
Strand 7
D
80 87parallel
Strand 8
D
68 75anti-parallel
Strand 9
D
53 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
106 107first strand
Strand 2
D
124 125anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
193 194first strand
Strand 2
D
241 242anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 4first strand
Strand 2
E
269 270parallel
Back to list of sheets
Back to top of page

There are 9 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
7 9first strand
Strand 2
E
262 265anti-parallel
Strand 3
E
247 250anti-parallel
Strand 4
E
222 227parallel
Strand 5
E
183 187parallel
Strand 6
E
155 161parallel
Strand 7
E
80 87parallel
Strand 8
E
68 75anti-parallel
Strand 9
E
53 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
105 107first strand
Strand 2
E
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
193 194first strand
Strand 2
E
241 242anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 4first strand
Strand 2
F
269 270parallel
Back to list of sheets
Back to top of page

There are 9 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
7 9first strand
Strand 2
F
262 265anti-parallel
Strand 3
F
247 250anti-parallel
Strand 4
F
222 227parallel
Strand 5
F
183 187parallel
Strand 6
F
155 161parallel
Strand 7
F
80 87parallel
Strand 8
F
68 75anti-parallel
Strand 9
F
53 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
105 107first strand
Strand 2
F
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
3 4first strand
Strand 2
G
269 270parallel
Back to list of sheets
Back to top of page

There are 9 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
7 9first strand
Strand 2
G
262 265anti-parallel
Strand 3
G
247 250anti-parallel
Strand 4
G
222 227parallel
Strand 5
G
183 187parallel
Strand 6
G
155 161parallel
Strand 7
G
80 87parallel
Strand 8
G
68 75anti-parallel
Strand 9
G
53 59anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
105 107first strand
Strand 2
G
124 126anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il