Analysis of interatomic Contacts of Structural Units in PDB entry:
3O4F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3O4F entry

There are 8 chains in PDB entry 3O4F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	SER 288
B	LYS 5	ALA 284
C	LYS 4	PRO 287
D	LYS 4	ALA 284
E	LYS 5	PRO 287
F	LYS 5	GLN 286
G	LYS 5	PRO 287
H	LYS 5	LEU 283

There are 86 helices in PDB entry 3O4F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	59	75	Right-handed alpha
Helix 2	2	A	89	97	Right-handed alpha
Helix 3	3	A	110	121	Right-handed alpha
Helix 4	4	A	121	126	Right-handed alpha
Helix 5	5	A	127	131	Right-handed 310
Helix 6	6	A	172	181	Right-handed alpha
Helix 7	7	A	199	213	Right-handed alpha
Helix 8	8	A	241	245	Right-handed 310
Helix 9	9	A	246	256	Right-handed alpha
Helix 10	10	A	265	273	Right-handed alpha
Helix 11	11	A	276	283	Right-handed alpha
Helix 12	12	B	59	75	Right-handed alpha
Helix 13	13	B	89	97	Right-handed alpha
Helix 14	14	B	110	121	Right-handed alpha
Helix 15	15	B	121	126	Right-handed alpha
Helix 16	16	B	127	131	Right-handed 310
Helix 17	17	B	141	146	Right-handed 310
Helix 18	18	B	171	181	Right-handed alpha
Helix 19	19	B	199	213	Right-handed alpha
Helix 20	20	B	246	256	Right-handed alpha
Helix 21	21	B	265	273	Right-handed alpha
Helix 22	22	B	276	283	Right-handed alpha
Helix 23	23	C	59	75	Right-handed alpha
Helix 24	24	C	89	97	Right-handed alpha
Helix 25	25	C	110	121	Right-handed alpha
Helix 26	26	C	121	126	Right-handed alpha
Helix 27	27	C	127	131	Right-handed 310
Helix 28	28	C	172	181	Right-handed alpha
Helix 29	29	C	199	213	Right-handed alpha
Helix 30	30	C	246	256	Right-handed alpha
Helix 31	31	C	265	273	Right-handed alpha
Helix 32	32	C	276	285	Right-handed alpha
Helix 33	33	D	59	75	Right-handed alpha
Helix 34	34	D	89	97	Right-handed alpha
Helix 35	35	D	110	121	Right-handed alpha
Helix 36	36	D	121	126	Right-handed alpha
Helix 37	37	D	127	131	Right-handed 310
Helix 38	38	D	167	170	Right-handed 310
Helix 39	39	D	171	181	Right-handed alpha
Helix 40	40	D	199	213	Right-handed alpha
Helix 41	41	D	246	256	Right-handed alpha
Helix 42	42	D	265	273	Right-handed alpha
Helix 43	43	D	276	283	Right-handed alpha
Helix 44	44	E	59	75	Right-handed alpha
Helix 45	45	E	89	97	Right-handed alpha
Helix 46	46	E	110	121	Right-handed alpha
Helix 47	47	E	121	126	Right-handed alpha
Helix 48	48	E	127	131	Right-handed 310
Helix 49	49	E	172	181	Right-handed alpha
Helix 50	50	E	199	213	Right-handed alpha
Helix 51	51	E	241	245	Right-handed 310
Helix 52	52	E	246	256	Right-handed alpha
Helix 53	53	E	265	273	Right-handed alpha
Helix 54	54	E	276	283	Right-handed alpha
Helix 55	55	E	284	286	Right-handed 310
Helix 56	56	F	59	75	Right-handed alpha
Helix 57	57	F	89	97	Right-handed alpha
Helix 58	58	F	110	121	Right-handed alpha
Helix 59	59	F	121	126	Right-handed alpha
Helix 60	60	F	127	131	Right-handed 310
Helix 61	61	F	171	181	Right-handed alpha
Helix 62	62	F	199	213	Right-handed alpha
Helix 63	63	F	246	256	Right-handed alpha
Helix 64	64	F	265	272	Right-handed alpha
Helix 65	65	F	276	282	Right-handed alpha
Helix 66	66	G	59	75	Right-handed alpha
Helix 67	67	G	89	97	Right-handed alpha
Helix 68	68	G	110	121	Right-handed alpha
Helix 69	69	G	121	126	Right-handed alpha
Helix 70	70	G	127	131	Right-handed 310
Helix 71	71	G	172	181	Right-handed alpha
Helix 72	72	G	199	213	Right-handed alpha
Helix 73	73	G	246	256	Right-handed alpha
Helix 74	74	G	265	273	Right-handed alpha
Helix 75	75	G	276	284	Right-handed alpha
Helix 76	76	H	59	75	Right-handed alpha
Helix 77	77	H	89	97	Right-handed alpha
Helix 78	78	H	110	121	Right-handed alpha
Helix 79	79	H	121	126	Right-handed alpha
Helix 80	80	H	127	131	Right-handed 310
Helix 81	81	H	171	181	Right-handed alpha
Helix 82	82	H	199	213	Right-handed alpha
Helix 83	83	H	241	245	Right-handed 310
Helix 84	84	H	246	256	Right-handed alpha
Helix 85	85	H	265	273	Right-handed alpha
Helix 86	86	H	276	283	Right-handed alpha

There are 19 sheets in PDB entry 3O4F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	15	21	anti-parallel
Strand 3	B	15	20	anti-parallel
Strand 4	B	6	8	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	28	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	44	49	anti-parallel
Strand 4	A	52	56	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	138	first strand
Strand 2	A	103	108	parallel
Strand 3	A	80	84	parallel
Strand 4	A	152	157	parallel
Strand 5	A	182	194	parallel
Strand 6	A	231	237	anti-parallel
Strand 7	A	215	221	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	56	first strand
Strand 2	B	44	49	anti-parallel
Strand 3	B	34	40	anti-parallel
Strand 4	B	23	30	anti-parallel
Strand 5	D	23	30	anti-parallel
Strand 6	D	34	40	anti-parallel
Strand 7	D	44	49	anti-parallel
Strand 8	D	52	56	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	138	first strand
Strand 2	B	103	108	parallel
Strand 3	B	80	85	parallel
Strand 4	B	152	158	parallel
Strand 5	B	182	194	parallel
Strand 6	B	231	237	anti-parallel
Strand 7	B	215	221	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	15	20	anti-parallel
Strand 3	D	15	21	anti-parallel
Strand 4	D	5	8	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	29	first strand
Strand 2	C	34	40	anti-parallel
Strand 3	C	44	49	anti-parallel
Strand 4	C	52	56	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	138	first strand
Strand 2	C	103	108	parallel
Strand 3	C	80	84	parallel
Strand 4	C	152	157	parallel
Strand 5	C	182	194	parallel
Strand 6	C	231	237	anti-parallel
Strand 7	C	215	221	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	138	first strand
Strand 2	D	103	108	parallel
Strand 3	D	80	85	parallel
Strand 4	D	152	158	parallel
Strand 5	D	182	194	parallel
Strand 6	D	231	237	anti-parallel
Strand 7	D	215	221	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	15	20	anti-parallel
Strand 3	F	15	20	anti-parallel
Strand 4	F	6	8	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	28	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	E	44	49	anti-parallel
Strand 4	E	52	56	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	138	first strand
Strand 2	E	103	108	parallel
Strand 3	E	80	84	parallel
Strand 4	E	152	157	parallel
Strand 5	E	182	194	parallel
Strand 6	E	231	237	anti-parallel
Strand 7	E	215	221	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	28	first strand
Strand 2	F	35	40	anti-parallel
Strand 3	F	44	49	anti-parallel
Strand 4	F	52	56	anti-parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	138	first strand
Strand 2	F	103	108	parallel
Strand 3	F	80	84	parallel
Strand 4	F	152	157	parallel
Strand 5	F	182	194	parallel
Strand 6	F	231	237	anti-parallel
Strand 7	F	215	221	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	8	first strand
Strand 2	G	15	20	anti-parallel
Strand 3	H	15	20	anti-parallel
Strand 4	H	6	8	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	27	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	G	44	49	anti-parallel
Strand 4	G	52	56	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	134	138	first strand
Strand 2	G	103	108	parallel
Strand 3	G	80	84	parallel
Strand 4	G	152	157	parallel
Strand 5	G	182	194	parallel
Strand 6	G	231	237	anti-parallel
Strand 7	G	215	221	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	28	first strand
Strand 2	H	35	40	anti-parallel
Strand 3	H	44	49	anti-parallel
Strand 4	H	52	56	anti-parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	103	108	parallel
Strand 3	H	80	84	parallel
Strand 4	H	152	157	parallel
Strand 5	H	182	194	parallel
Strand 6	H	231	237	anti-parallel
Strand 7	H	215	221	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3O4F

Analysis of interatomic Contacts of Structural Units in PDB entry:
3O4F