Analysis of interatomic Contacts of Structural Units in PDB entry:
3O8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O8C entry

There are 4 chains in PDB entry 3O8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -15THR 631
C
 U 3 U 3
C
 U 5 U 8
B
 GLY -15THR 631
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3O8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
56 60Right-handed alpha
Helix 3
3
A
133 136Right-handed 310
Helix 4
4
A
172 181Right-handed alpha
Helix 5
5
A
212 221Right-handed alpha
Helix 6
6
A
231 246Right-handed alpha
Helix 7
7
A
270 276Right-handed alpha
Helix 8
8
A
296 310Right-handed alpha
Helix 9
9
A
355 359Right-handed 310
Helix 10
10
A
370 383Right-handed alpha
Helix 11
11
A
396 400Right-handed 310
Helix 12
12
A
413 418Right-handed alpha
Helix 13
13
A
454 463Right-handed alpha
Helix 14
14
A
487 501Right-handed alpha
Helix 15
15
A
505 518Right-handed alpha
Helix 16
16
A
528 538Right-handed alpha
Helix 17
17
A
543 554Right-handed alpha
Helix 18
18
A
557 571Right-handed alpha
Helix 19
19
A
579 592Right-handed 310
Helix 20
20
A
613 623Right-handed alpha
Helix 21
21
B
12 23Right-handed alpha
Helix 22
22
B
55 60Right-handed alpha
Helix 23
23
B
133 136Right-handed 310
Helix 24
24
B
172 180Right-handed alpha
Helix 25
25
B
212 221Right-handed alpha
Helix 26
26
B
231 247Right-handed alpha
Helix 27
27
B
270 276Right-handed alpha
Helix 28
28
B
296 310Right-handed alpha
Helix 29
29
B
355 359Right-handed 310
Helix 30
30
B
370 384Right-handed alpha
Helix 31
31
B
396 400Right-handed 310
Helix 32
32
B
412 418Right-handed alpha
Helix 33
33
B
454 463Right-handed alpha
Helix 34
34
B
487 501Right-handed alpha
Helix 35
35
B
505 518Right-handed alpha
Helix 36
36
B
528 538Right-handed alpha
Helix 37
37
B
543 554Right-handed alpha
Helix 38
38
B
557 572Right-handed alpha
Helix 39
39
B
579 589Right-handed 310
Helix 40
40
B
613 623Right-handed alpha
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There are 15 sheets in PDB entry 3O8C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
-12 -5anti-parallel
Strand 3
A
33 37anti-parallel
Strand 4
A
42 48anti-parallel
Strand 5
A
51 55anti-parallel
Strand 6
A
82 86anti-parallel
Strand 7
A
75 77anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
69 71anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 629first strand
Strand 2
A
150 160anti-parallel
Strand 3
A
163 171anti-parallel
Strand 4
A
123 131anti-parallel
Strand 5
A
113 118anti-parallel
Strand 6
A
103 107anti-parallel
Strand 7
A
142 144anti-parallel
Strand 8
A
150 160anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 203first strand
Strand 2
A
317 322parallel
Strand 3
A
286 289parallel
Strand 4
A
225 229parallel
Strand 5
A
265 269parallel
Strand 6
A
251 253parallel
Strand 7
A
258 259anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 340first strand
Strand 2
A
471 475parallel
Strand 3
A
424 427parallel
Strand 4
A
363 367parallel
Strand 5
A
406 410parallel
Strand 6
A
388 391parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 349first strand
Strand 2
A
352 354anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 437first strand
Strand 2
A
445 452anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 597first strand
Strand 2
A
609 610parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
-12 -5anti-parallel
Strand 3
B
33 37anti-parallel
Strand 4
B
42 48anti-parallel
Strand 5
B
51 54anti-parallel
Strand 6
B
82 86anti-parallel
Strand 7
B
75 77anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
627 629first strand
Strand 2
B
150 160anti-parallel
Strand 3
B
163 171anti-parallel
Strand 4
B
123 131anti-parallel
Strand 5
B
113 118anti-parallel
Strand 6
B
103 107anti-parallel
Strand 7
B
142 144anti-parallel
Strand 8
B
150 160anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 203first strand
Strand 2
B
317 322parallel
Strand 3
B
286 289parallel
Strand 4
B
225 229parallel
Strand 5
B
265 269parallel
Strand 6
B
251 253parallel
Strand 7
B
258 259anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 340first strand
Strand 2
B
471 475parallel
Strand 3
B
424 427parallel
Strand 4
B
363 367parallel
Strand 5
B
406 410parallel
Strand 6
B
388 391parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 349first strand
Strand 2
B
352 354anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
430 437first strand
Strand 2
B
445 452anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
596 597first strand
Strand 2
B
609 610parallel
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