Analysis of interatomic Contacts of Structural Units in PDB entry:
3O9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O9M entry

There are 2 chains in PDB entry 3O9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4GLY 534
B
 ILE 4GLY 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3O9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 42Right-handed 310
Helix 2
2
A
76 81Right-handed alpha
Helix 3
3
A
125 129Right-handed 310
Helix 4
4
A
130 138Right-handed alpha
Helix 5
5
A
148 154Right-handed alpha
Helix 6
6
A
165 182Right-handed alpha
Helix 7
7
A
183 185Right-handed 310
Helix 8
8
A
198 210Right-handed alpha
Helix 9
9
A
235 250Right-handed alpha
Helix 10
10
A
256 265Right-handed alpha
Helix 11
11
A
268 277Right-handed alpha
Helix 12
12
A
302 309Right-handed alpha
Helix 13
13
A
326 331Right-handed alpha
Helix 14
14
A
346 358Right-handed alpha
Helix 15
15
A
362 375Right-handed alpha
Helix 16
16
A
383 398Right-handed alpha
Helix 17
17
A
398 411Right-handed alpha
Helix 18
18
A
431 435Right-handed 310
Helix 19
19
A
441 446Right-handed alpha
Helix 20
20
A
447 451Right-handed 310
Helix 21
21
A
457 478Right-handed alpha
Helix 22
22
A
515 524Right-handed alpha
Helix 23
23
A
524 533Right-handed alpha
Helix 24
24
B
38 42Right-handed 310
Helix 25
25
B
76 81Right-handed alpha
Helix 26
26
B
125 129Right-handed 310
Helix 27
27
B
130 138Right-handed alpha
Helix 28
28
B
149 154Right-handed alpha
Helix 29
29
B
165 182Right-handed alpha
Helix 30
30
B
183 185Right-handed 310
Helix 31
31
B
198 210Right-handed alpha
Helix 32
32
B
211 214Right-handed 310
Helix 33
33
B
235 250Right-handed alpha
Helix 34
34
B
256 265Right-handed alpha
Helix 35
35
B
268 277Right-handed alpha
Helix 36
36
B
302 309Right-handed alpha
Helix 37
37
B
326 333Right-handed 310
Helix 38
38
B
346 358Right-handed alpha
Helix 39
39
B
362 375Right-handed alpha
Helix 40
40
B
383 398Right-handed alpha
Helix 41
41
B
398 411Right-handed alpha
Helix 42
42
B
431 435Right-handed 310
Helix 43
43
B
441 446Right-handed alpha
Helix 44
44
B
447 451Right-handed 310
Helix 45
45
B
457 478Right-handed alpha
Helix 46
46
B
515 524Right-handed alpha
Helix 47
47
B
524 533Right-handed alpha
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There are 7 sheets in PDB entry 3O9M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
11 14anti-parallel
Strand 3
A
55 57parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
23 27anti-parallel
Strand 3
A
94 99anti-parallel
Strand 4
A
31 32anti-parallel
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There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
23 27anti-parallel
Strand 3
A
94 99anti-parallel
Strand 4
A
140 144anti-parallel
Strand 5
A
107 113parallel
Strand 6
A
187 197parallel
Strand 7
A
219 223parallel
Strand 8
A
317 322parallel
Strand 9
A
416 421parallel
Strand 10
A
499 503parallel
Strand 11
A
510 512anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
11 14anti-parallel
Strand 3
B
55 57parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 20first strand
Strand 2
B
23 27anti-parallel
Strand 3
B
94 100anti-parallel
Strand 4
B
31 32anti-parallel
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There are 11 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 20first strand
Strand 2
B
23 27anti-parallel
Strand 3
B
94 100anti-parallel
Strand 4
B
140 144anti-parallel
Strand 5
B
107 113parallel
Strand 6
B
187 197parallel
Strand 7
B
219 223parallel
Strand 8
B
317 322parallel
Strand 9
B
416 421parallel
Strand 10
B
499 503parallel
Strand 11
B
510 512anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
88 89parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il