Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 3OB1 entry
Note, this PDB entry contains
modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is
treated as heterogroup (ligand) both in the
PDB entry and in LPC/CSU analysis.
There are 3 chains in PDB entry 3OB1
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
ARG 50 | GLU 54 |
A
|
GLU 57 | PRO 59 |
B
|
MET 55 | THR 350 |
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There are 16
helices in PDB entry 3OB1. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | B
| 55 |
71 | Right-handed alpha |
Helix 2 |
2 | B
| 72 |
76 | Right-handed 310 |
Helix 3 |
3 | B
| 83 |
102 | Right-handed alpha |
Helix 4 |
4 | B
| 105 |
112 | Right-handed alpha |
Helix 5 |
5 | B
| 112 |
137 | Right-handed alpha |
Helix 6 |
6 | B
| 138 |
142 | Right-handed 310 |
Helix 7 |
7 | B
| 145 |
169 | Right-handed alpha |
Helix 8 |
8 | B
| 170 |
173 | Right-handed 310 |
Helix 9 |
9 | B
| 183 |
195 | Right-handed alpha |
Helix 10 |
10 | B
| 202 |
213 | Right-handed alpha |
Helix 11 |
11 | B
| 217 |
229 | Right-handed alpha |
Helix 12 |
12 | B
| 238 |
248 | Right-handed alpha |
Helix 13 |
13 | B
| 250 |
252 | Right-handed 310 |
Helix 14 |
14 | B
| 253 |
262 | Right-handed alpha |
Helix 15 |
15 | B
| 273 |
283 | Right-handed alpha |
Helix 16 |
16 | B
| 323 |
334 | Right-handed alpha |
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There are
2 sheets in PDB entry 3OB1. Click on sheet of
interest to get list of strands forming it:
A,
B,
There are 2
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
B
| 199 |
201 | first strand |
Strand 2 |
B
| 235 |
237 | anti-parallel |
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There are 4
strands in B sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
B
| 314 |
317 | first strand |
Strand 2 |
B
| 303 |
308 | anti-parallel |
Strand 3 |
B
| 290 |
295 | anti-parallel |
Strand 4 |
B
| 339 |
340 | parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il