Analysis of interatomic Contacts of Structural Units in PDB entry:
3ODO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ODO entry

There are 2 chains in PDB entry 3ODO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 392SER 761
B
 GLN 392SER 761
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3ODO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
403 408Right-handed alpha
Helix 2
2
A
411 442Right-handed alpha
Helix 3
3
A
442 450Right-handed alpha
Helix 4
4
A
453 461Right-handed alpha
Helix 5
5
A
463 485Right-handed alpha
Helix 6
6
A
492 501Right-handed alpha
Helix 7
7
A
501 518Right-handed alpha
Helix 8
8
A
518 531Right-handed alpha
Helix 9
9
A
533 545Right-handed alpha
Helix 10
10
A
546 550Right-handed 310
Helix 11
11
A
553 558Right-handed alpha
Helix 12
12
A
559 578Right-handed alpha
Helix 13
13
A
581 621Right-handed alpha
Helix 14
14
A
624 629Right-handed alpha
Helix 15
15
A
632 636Right-handed 310
Helix 16
16
A
744 760Right-handed alpha
Helix 17
17
B
403 408Right-handed alpha
Helix 18
18
B
411 442Right-handed alpha
Helix 19
19
B
442 450Right-handed alpha
Helix 20
20
B
453 461Right-handed alpha
Helix 21
21
B
463 485Right-handed alpha
Helix 22
22
B
492 499Right-handed alpha
Helix 23
23
B
501 518Right-handed alpha
Helix 24
24
B
518 533Right-handed alpha
Helix 25
25
B
533 546Right-handed alpha
Helix 26
26
B
547 550Right-handed 310
Helix 27
27
B
553 558Right-handed alpha
Helix 28
28
B
559 579Right-handed alpha
Helix 29
29
B
581 621Right-handed alpha
Helix 30
30
B
624 629Right-handed alpha
Helix 31
31
B
632 636Right-handed 310
Helix 32
32
B
744 760Right-handed alpha
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There are 4 sheets in PDB entry 3ODO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
684 686parallel
Strand 3
A
674 681anti-parallel
Strand 4
A
707 709anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
684 686parallel
Strand 3
A
674 681anti-parallel
Strand 4
A
663 671anti-parallel
Strand 5
A
648 657anti-parallel
Strand 6
A
735 741anti-parallel
Strand 7
A
724 730anti-parallel
Strand 8
A
714 717anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
622 623first strand
Strand 2
B
684 686parallel
Strand 3
B
674 681anti-parallel
Strand 4
B
707 709anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
622 623first strand
Strand 2
B
684 686parallel
Strand 3
B
674 681anti-parallel
Strand 4
B
663 671anti-parallel
Strand 5
B
648 657anti-parallel
Strand 6
B
735 741anti-parallel
Strand 7
B
724 730anti-parallel
Strand 8
B
713 717anti-parallel
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