Analysis of interatomic Contacts of Structural Units in PDB entry:
3ODX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ODX entry

There are 2 chains in PDB entry 3ODX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 411PRO 765
B
 PRO 411PRO 765
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 3ODX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
412 442Right-handed alpha
Helix 2
2
A
442 449Right-handed alpha
Helix 3
3
A
453 461Right-handed alpha
Helix 4
4
A
463 484Right-handed alpha
Helix 5
5
A
492 501Right-handed alpha
Helix 6
6
A
501 518Right-handed alpha
Helix 7
7
A
518 533Right-handed alpha
Helix 8
8
A
533 545Right-handed alpha
Helix 9
9
A
546 550Right-handed 310
Helix 10
10
A
553 558Right-handed alpha
Helix 11
11
A
559 577Right-handed alpha
Helix 12
12
A
581 621Right-handed alpha
Helix 13
13
A
635 639Right-handed 310
Helix 14
14
A
711 713Right-handed 310
Helix 15
15
A
744 761Right-handed alpha
Helix 16
16
B
411 442Right-handed alpha
Helix 17
17
B
442 450Right-handed alpha
Helix 18
18
B
453 461Right-handed alpha
Helix 19
19
B
463 485Right-handed alpha
Helix 20
20
B
493 501Right-handed alpha
Helix 21
21
B
501 518Right-handed alpha
Helix 22
22
B
519 533Right-handed alpha
Helix 23
23
B
533 544Right-handed alpha
Helix 24
24
B
545 550Right-handed 310
Helix 25
25
B
553 558Right-handed alpha
Helix 26
26
B
559 578Right-handed alpha
Helix 27
27
B
581 621Right-handed alpha
Helix 28
28
B
624 630Right-handed alpha
Helix 29
29
B
634 638Right-handed 310
Helix 30
30
B
711 713Right-handed 310
Helix 31
31
B
744 761Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3ODX. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
684 686parallel
Strand 3
A
674 681anti-parallel
Strand 4
A
707 709anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
684 686parallel
Strand 3
A
674 681anti-parallel
Strand 4
A
662 671anti-parallel
Strand 5
A
648 659anti-parallel
Strand 6
A
737 741anti-parallel
Strand 7
A
724 728anti-parallel
Strand 8
A
715 717anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
622 623first strand
Strand 2
B
684 686parallel
Strand 3
B
674 681anti-parallel
Strand 4
B
707 709anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
622 623first strand
Strand 2
B
684 686parallel
Strand 3
B
674 681anti-parallel
Strand 4
B
664 671anti-parallel
Strand 5
B
648 656anti-parallel
Strand 6
B
737 741anti-parallel
Strand 7
B
724 728anti-parallel
Strand 8
B
715 717anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il