Analysis of interatomic Contacts of Structural Units in PDB entry:
3OFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OFM entry

There is 1 chain in PDB entry 3OFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8GLN 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3OFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 20Right-handed 310
Helix 2
2
A
21 26Right-handed alpha
Helix 3
3
A
27 30Right-handed 310
Helix 4
4
A
75 89Right-handed alpha
Helix 5
5
A
121 126Right-handed alpha
Helix 6
6
A
130 151Right-handed alpha
Helix 7
7
A
159 161Right-handed 310
Helix 8
8
A
195 199Right-handed 310
Helix 9
9
A
200 205Right-handed alpha
Helix 10
10
A
212 229Right-handed alpha
Helix 11
11
A
238 251Right-handed alpha
Helix 12
12
A
251 262Right-handed alpha
Helix 13
13
A
269 274Right-handed alpha
Helix 14
14
A
281 286Right-handed 310
Helix 15
15
A
290 294Right-handed 310
Helix 16
16
A
295 306Right-handed alpha
Helix 17
17
A
315 321Right-handed alpha
Helix 18
18
A
322 324Right-handed 310
Helix 19
19
A
325 332Right-handed alpha
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There are 3 sheets in PDB entry 3OFM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
98 103parallel
Strand 3
A
110 115anti-parallel
Strand 4
A
64 71anti-parallel
Strand 5
A
52 59anti-parallel
Strand 6
A
40 48anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
181 182anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 166first strand
Strand 2
A
171 174anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il