Analysis of interatomic Contacts of Structural Units in PDB entry:
3OG6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OG6 entry

There are 2 chains in PDB entry 3OG6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 22LEU 170
B
 LEU 4PRO 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3OG6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 43Right-handed alpha
Helix 2
2
A
59 63Right-handed 310
Helix 3
3
A
64 66Right-handed 310
Helix 4
4
A
67 87Right-handed alpha
Helix 5
5
A
91 111Right-handed alpha
Helix 6
6
A
125 141Right-handed alpha
Helix 7
7
A
142 160Right-handed alpha
Helix 8
8
A
160 168Right-handed alpha
Helix 9
9
B
52 55Right-handed 310
Helix 10
10
B
98 103Right-handed alpha
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There are 6 sheets in PDB entry 3OG6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 15first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
61 63anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
34 40anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
87 88anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
34 40anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
92 93anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 115first strand
Strand 2
B
118 124anti-parallel
Strand 3
B
161 165anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
136 144anti-parallel
Strand 3
B
173 183anti-parallel
Strand 4
B
187 189anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
136 144anti-parallel
Strand 3
B
173 183anti-parallel
Strand 4
B
196 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il