Analysis of interatomic Contacts of Structural Units in PDB entry:
3OOY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3OOY entry

There are 2 chains in PDB entry 3OOY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 8	ILE 620
B	SER 8	ILE 620

There are 56 helices in PDB entry 3OOY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	34	Right-handed alpha
Helix 2	2	A	37	43	Right-handed alpha
Helix 3	3	A	44	54	Right-handed alpha
Helix 4	4	A	75	77	Right-handed 310
Helix 5	5	A	78	89	Right-handed alpha
Helix 6	6	A	93	100	Right-handed 310
Helix 7	7	A	127	142	Right-handed alpha
Helix 8	8	A	156	159	Right-handed 310
Helix 9	9	A	160	173	Right-handed alpha
Helix 10	10	A	198	209	Right-handed alpha
Helix 11	11	A	220	230	Right-handed alpha
Helix 12	12	A	263	276	Right-handed alpha
Helix 13	13	A	317	332	Right-handed alpha
Helix 14	14	A	342	347	Right-handed alpha
Helix 15	15	A	348	355	Right-handed alpha
Helix 16	16	A	365	378	Right-handed alpha
Helix 17	17	A	379	381	Right-handed 310
Helix 18	18	A	391	395	Right-handed 310
Helix 19	19	A	396	406	Right-handed alpha
Helix 20	20	A	418	422	Right-handed 310
Helix 21	21	A	425	429	Right-handed 310
Helix 22	22	A	432	439	Right-handed alpha
Helix 23	23	A	450	464	Right-handed alpha
Helix 24	24	A	509	524	Right-handed alpha
Helix 25	25	A	541	552	Right-handed alpha
Helix 26	26	A	567	577	Right-handed alpha
Helix 27	27	A	597	605	Right-handed alpha
Helix 28	28	A	608	619	Right-handed alpha
Helix 29	29	B	8	34	Right-handed alpha
Helix 30	30	B	37	43	Right-handed alpha
Helix 31	31	B	44	54	Right-handed alpha
Helix 32	32	B	75	77	Right-handed 310
Helix 33	33	B	78	89	Right-handed alpha
Helix 34	34	B	93	100	Right-handed 310
Helix 35	35	B	127	142	Right-handed alpha
Helix 36	36	B	156	159	Right-handed 310
Helix 37	37	B	160	173	Right-handed alpha
Helix 38	38	B	198	209	Right-handed alpha
Helix 39	39	B	220	230	Right-handed alpha
Helix 40	40	B	263	276	Right-handed alpha
Helix 41	41	B	317	332	Right-handed alpha
Helix 42	42	B	342	347	Right-handed alpha
Helix 43	43	B	348	355	Right-handed alpha
Helix 44	44	B	365	378	Right-handed alpha
Helix 45	45	B	379	381	Right-handed 310
Helix 46	46	B	391	395	Right-handed 310
Helix 47	47	B	396	406	Right-handed alpha
Helix 48	48	B	418	422	Right-handed 310
Helix 49	49	B	425	429	Right-handed 310
Helix 50	50	B	432	439	Right-handed alpha
Helix 51	51	B	450	464	Right-handed alpha
Helix 52	52	B	509	525	Right-handed alpha
Helix 53	53	B	541	551	Right-handed alpha
Helix 54	54	B	567	577	Right-handed alpha
Helix 55	55	B	597	605	Right-handed alpha
Helix 56	56	B	608	619	Right-handed alpha

There are 8 sheets in PDB entry 3OOY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	A	149	154	parallel
Strand 3	A	178	184	parallel
Strand 4	A	236	241	parallel
Strand 5	A	212	217	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	316	first strand
Strand 2	A	476	478	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	335	339	parallel
Strand 3	A	383	389	parallel
Strand 4	A	410	415	parallel
Strand 5	A	467	471	parallel
Strand 6	A	443	446	parallel
Strand 7	A	536	538	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	496	first strand
Strand 2	A	528	533	anti-parallel
Strand 3	A	501	506	parallel
Strand 4	A	555	563	parallel
Strand 5	A	583	589	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	73	first strand
Strand 2	B	149	154	parallel
Strand 3	B	178	184	parallel
Strand 4	B	236	241	parallel
Strand 5	B	212	217	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	316	first strand
Strand 2	B	476	478	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	335	339	parallel
Strand 3	B	383	389	parallel
Strand 4	B	410	415	parallel
Strand 5	B	467	471	parallel
Strand 6	B	443	446	parallel
Strand 7	B	536	538	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	496	first strand
Strand 2	B	528	533	anti-parallel
Strand 3	B	501	506	parallel
Strand 4	B	555	563	parallel
Strand 5	B	583	589	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3OOY

Analysis of interatomic Contacts of Structural Units in PDB entry:
3OOY