Analysis of interatomic Contacts of Structural Units in PDB entry:
3ORO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ORO entry

There is 1 chain in PDB entry 3ORO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 9LEU 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 3ORO. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
49 62Right-handed alpha
Helix 2
2
A
100 107Right-handed alpha
Helix 3
3
A
111 132Right-handed alpha
Helix 4
4
A
140 142Right-handed 310
Helix 5
5
A
184 190Right-handed alpha
Helix 6
6
A
194 212Right-handed alpha
Helix 7
7
A
220 231Right-handed alpha
Helix 8
8
A
235 239Right-handed 310
Helix 9
9
A
244 255Right-handed alpha
Helix 10
10
A
258 262Right-handed 310
Helix 11
11
A
265 278Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3ORO. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
11 19first strand
Strand 2
A
23 30anti-parallel
Strand 3
A
35 42anti-parallel
Strand 4
A
87 93anti-parallel
Strand 5
A
74 80anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
97 99first strand
Strand 2
A
144 147anti-parallel
Strand 3
A
152 154anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il